RNA id: AMCG00018878



Basic Information


Item Value
RNA id AMCG00018878
length 366
RNA type mRNA
GC content 0.55
exon number 2
gene id AMCG00018878
representative True

Chromosome Information


Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 24314433 ~ 24315050 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGTCTCGTATCCATCAGTTTTCGATCTTTGGAGCCCGGACTTTGGGGGTAAGGAGCAGCGAAGGACCCAGCCTCAGCAAAGCAGAGTTCATCGACAAAGTACGTCAGAGCAACCAGGCCTGTCAGAGGGGGGACTTCCACACGGCTATCCGCCTCTATACTGAGGCCCTGGAGGCCGACCCCCAGAACTGCATCCTCTACAGCAACCGGTCCGCTGCTTACATGAAGGTGCAGGAGTATCACGTTGCCCTGGACGACGCCATCAAAGCCAGGCTTCTCAATCCGAAGTGGCCAAAGGGTGCACTGCTCTGTTGTACTAAAGGAAGTAGAGAGGCTGTGGAGGGCTTCTTAAAGCTTGTGGTTTGA

Function


GO:

id name namespace
GO:0045087 innate immune response biological_process

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU149444 lncRNA downstream 1202913 23109601 ~ 23111520 (-) True G119235
TU149381 lncRNA downstream 1329661 22984184 ~ 22984772 (-) True G119181
TU149380 lncRNA downstream 1330867 22982866 ~ 22983566 (-) True G119180
TU149321 lncRNA downstream 1456754 22834759 ~ 22857679 (-) True G119129
TU149317 lncRNA downstream 1548407 22762360 ~ 22766026 (-) True G119128
TU149635 lncRNA upstream 204363 24519413 ~ 24608462 (-) True G119382
TU149638 lncRNA upstream 251096 24566146 ~ 24568299 (-) True G119384
TU149701 lncRNA upstream 521737 24836787 ~ 24842121 (-) True G119426
TU149749 lncRNA upstream 729901 25044951 ~ 25045344 (-) True G119466
TU149859 lncRNA upstream 947312 25262362 ~ 25333175 (-) True G119557
AMCG00018875 mRNA downstream 227184 24069954 ~ 24087249 (-) True AMCG00018875
AMCG00018874 mRNA downstream 287835 24022672 ~ 24026598 (-) True AMCG00018874
AMCG00018873 mRNA downstream 312216 23941017 ~ 24002217 (-) True AMCG00018873
AMCG00018872 mRNA downstream 385995 23894492 ~ 23928438 (-) True AMCG00018872
AMCG00018870 mRNA downstream 441402 23860512 ~ 23873031 (-) True AMCG00018870
AMCG00018877 mRNA upstream 41888 24356938 ~ 24370642 (-) True AMCG00018877
AMCG00018879 mRNA upstream 71549 24386599 ~ 24455299 (-) True AMCG00018879
AMCG00018881 mRNA upstream 144440 24459490 ~ 24462910 (-) True AMCG00018881
AMCG00018882 mRNA upstream 151361 24466411 ~ 24505090 (-) True AMCG00018882
AMCG00018880 mRNA upstream 194428 24509478 ~ 24526970 (-) True AMCG00018880
TU149337 other downstream 1508095 22804345 ~ 22806338 (-) True G119144
TU149076 other downstream 2200738 22080464 ~ 22113695 (-) True G118936
TU148773 other downstream 3616606 20696834 ~ 20697827 (-) False G118727
TU148729 other downstream 3708613 20603518 ~ 20605820 (-) False AMCG00018794
TU149755 other upstream 760348 25075398 ~ 25077580 (-) False AMCG00018898
TU149831 other upstream 819721 25134771 ~ 25171644 (-) True G119538
TU149840 other upstream 871157 25186207 ~ 25187408 (-) True G119545
TU150163 other upstream 2498430 26813480 ~ 26814073 (-) True G119827
TU150237 other upstream 2915823 27230873 ~ 27242574 (-) True G119893

Expression Profile