RNA id: AMCG00018881


Basic Information

Item Value
RNA id AMCG00018881
length 881
RNA type mRNA
GC content 0.55
exon number 7
gene id AMCG00018881
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 24459490 ~ 24462910 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAAGCAGCGTGTTTTTAATCGTCGGTGTCCCGGATGTCGATCCTTTTCTAGTGCGCTAAGATGGCAgaggacaagaagaagaaggtgGCAAAGGCAAAGCACTCGAGCCGCAACCCGGTGCTGGCTCGCGGCCTGGGCAGGTACTCGCGCAGTGCCATGTTTGCCAGGCGGGCTCTGTACAAGAGAAAGACCAAGGCAACAGAGACCAAGGTGGAGAAGAAGCTGAGAGAGAAGGCTCCGGCAACAGTCACAAAGACCGTCGGAGGCGACAAGAATGGAGGCACACGTGTGGTCAAGGTCCGCAAGATGCCGCGTTACTACCCCACTGAGGATGTTCCTCGCAAGCTGCTGAGTCACGGCAAGAAGCCCTTCAGCCAGCACAAGAGGAAGCTGCGCACCAGCATCACCCCTGGCACTGTCCTCATCCTGCTGACCGGCCGTCACCGGGGGAAGCGTGTTGTTTTCCTGAAGCAGCTTGGCAGTGGCCTTCTGCTTGTGACTGGTCCTCTGGCCCTGAACCGCGTGCCCCTGCGCAGAGCCCACCAGAAATTCGCCATCGCCACCAGCACCAAGGTCGACATCTCCAGCGTCAAGATCCCCAAGACTTTGACCGACACTTACTTCAAGAAGAAGAAGCTGAGGCGACCCAGGCACCAGGAGGGAGAGATCTTCGACACTGAGAAAGAGAAATACTCACTCACAGAGGAGCGAAAATCTGACCAGAAAGCAGTGGACTCCCAGCTCCTGCCCCTCATCAAGAAGGTCCCCCAGCTGAAGGGCTACCTGAGATCCACTTTCTGCCTCTCCAATGGAGTTTACCCACACAAGCTGGTTTTCTAAACATGTACTAAAGATATTAAATGTGGATTCAACTATGTACA

Function

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02934 RP-L6e, RPL6; large subunit ribosomal protein L6e

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149444 lncRNA downstream 1347970 23109601 ~ 23111520 (-) True G119235
TU149381 lncRNA downstream 1474718 22984184 ~ 22984772 (-) True G119181
TU149380 lncRNA downstream 1475924 22982866 ~ 22983566 (-) True G119180
TU149321 lncRNA downstream 1601811 22834759 ~ 22857679 (-) True G119129
TU149317 lncRNA downstream 1693464 22762360 ~ 22766026 (-) True G119128
TU149635 lncRNA upstream 56503 24519413 ~ 24608462 (-) True G119382
TU149638 lncRNA upstream 103236 24566146 ~ 24568299 (-) True G119384
TU149701 lncRNA upstream 373877 24836787 ~ 24842121 (-) True G119426
TU149749 lncRNA upstream 582041 25044951 ~ 25045344 (-) True G119466
TU149859 lncRNA upstream 799452 25262362 ~ 25333175 (-) True G119557
AMCG00018879 mRNA downstream 4191 24386599 ~ 24455299 (-) True AMCG00018879
AMCG00018877 mRNA downstream 88848 24356938 ~ 24370642 (-) True AMCG00018877
AMCG00018878 mRNA downstream 144440 24314433 ~ 24315050 (-) True AMCG00018878
AMCG00018875 mRNA downstream 372241 24069954 ~ 24087249 (-) True AMCG00018875
AMCG00018874 mRNA downstream 432892 24022672 ~ 24026598 (-) True AMCG00018874
AMCG00018882 mRNA upstream 3501 24466411 ~ 24505090 (-) True AMCG00018882
AMCG00018880 mRNA upstream 46568 24509478 ~ 24526970 (-) True AMCG00018880
AMCG00018884 mRNA upstream 77471 24540381 ~ 24571184 (-) True AMCG00018884
AMCG00018883 mRNA upstream 113143 24576053 ~ 24589514 (-) True AMCG00018883
AMCG00018885 mRNA upstream 160793 24623703 ~ 24624608 (-) True AMCG00018885
TU149337 other downstream 1653152 22804345 ~ 22806338 (-) True G119144
TU149076 other downstream 2345795 22080464 ~ 22113695 (-) True G118936
TU148773 other downstream 3761663 20696834 ~ 20697827 (-) False G118727
TU148729 other downstream 3853670 20603518 ~ 20605820 (-) False AMCG00018794
TU149755 other upstream 612488 25075398 ~ 25077580 (-) False AMCG00018898
TU149831 other upstream 671861 25134771 ~ 25171644 (-) True G119538
TU149840 other upstream 723297 25186207 ~ 25187408 (-) True G119545
TU150163 other upstream 2350570 26813480 ~ 26814073 (-) True G119827
TU150237 other upstream 2767963 27230873 ~ 27242574 (-) True G119893

Expression Profile