RNA id: AMCG00018885


Basic Information

Item Value
RNA id AMCG00018885
length 906
RNA type mRNA
GC content 0.60
exon number 1
gene id AMCG00018885
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 24623703 ~ 24624608 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAATGGCAACACTATTCAACAAGGGACTACTTCACCTTCCGTTACACAGCCCAGGGGCTGGAAGGAGTTCTGCGAGTTGCATGCCATTTCGACGGCCAGGGAGCTAGCCAAGCAGTACCGCCGGTTTGCTAGCGAATACCCTCAACATGACGTCTTGGCGGCCGAGAACTTCTCCAAGCAGTTTGCTGACCTCTTCCAGCAGTATTTCCGCAACGAGGTTGTGGGGGAGGGCCTGGCCATGACCACGCGCTACAGAATCACGTCGTTCTCCGGGGCGCAGGATTATCGGGTTGCAAACAGACGACTTTCCGAAGGCAACCCAGCCGTGATTGCGGTCCTGGCCCCCAAAGCGGAGCCCCTGCCTGTGCCCCGCGAGCAGGAACGGAATGTGCACCAGGCCTCTACTGACACTACTTGCCCCCCCCGCCTGCTGCCCAGGAGCCGCAGCAGCGAGGAGGATTCAGATGGTGCGCTCTCCACCTCTGAACGGCACTCGCCGTCTCCCTCCGCTGCCGCCAGCACCACTCACTTTTCCATGAGCCAAATCCGGCACAGTGTGCGCAGGCTCTTCAAGAGGGAGTCCCTGGAGTCGGTGGCTGCTGCTGGGTCAGGGGACATGAGAGACAGGGGGGCCTCTGGGGCCACAGAGGAGGCCACTGCCTCCATGCCCACCAGTCAGCGCTGGTTTGACCGGTTGGCCAATAGAATTCGTCCCCGGAGTGTCTTGGGCAGGGGGCGTATTCACGAGAGCTGTAAGGAGGGCCATCTCAAATATCTCATGGTGGACGACACTATCTTGGACACGCAGCCCCGCTGGCAGCGCTGCAAGCTGCTCGTGAGAAAGACTCGTGGAATGGGAAGTGAGGAATACCAGCTGGAGCTGTTTGATCCACCCAAGGTATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149635 lncRNA downstream 15241 24519413 ~ 24608462 (-) True G119382
TU149638 lncRNA downstream 55404 24566146 ~ 24568299 (-) True G119384
TU149444 lncRNA downstream 1512183 23109601 ~ 23111520 (-) True G119235
TU149381 lncRNA downstream 1638931 22984184 ~ 22984772 (-) True G119181
TU149380 lncRNA downstream 1640137 22982866 ~ 22983566 (-) True G119180
TU149701 lncRNA upstream 212179 24836787 ~ 24842121 (-) True G119426
TU149749 lncRNA upstream 420343 25044951 ~ 25045344 (-) True G119466
TU149859 lncRNA upstream 637754 25262362 ~ 25333175 (-) True G119557
TU149903 lncRNA upstream 854402 25479010 ~ 25479524 (-) True G119600
TU149919 lncRNA upstream 947446 25572054 ~ 25578122 (-) True G119615
AMCG00018883 mRNA downstream 34189 24576053 ~ 24589514 (-) True AMCG00018883
AMCG00018884 mRNA downstream 52519 24540381 ~ 24571184 (-) True AMCG00018884
AMCG00018880 mRNA downstream 96733 24509478 ~ 24526970 (-) True AMCG00018880
AMCG00018882 mRNA downstream 118613 24466411 ~ 24505090 (-) True AMCG00018882
AMCG00018881 mRNA downstream 160793 24459490 ~ 24462910 (-) True AMCG00018881
AMCG00018888 mRNA upstream 27851 24652459 ~ 24659021 (-) True AMCG00018888
AMCG00018889 mRNA upstream 35858 24660466 ~ 24690814 (-) True AMCG00018889
AMCG00018887 mRNA upstream 91215 24715823 ~ 24736151 (-) True AMCG00018887
AMCG00018890 mRNA upstream 132261 24756869 ~ 24776700 (-) True AMCG00018890
AMCG00018893 mRNA upstream 174411 24799019 ~ 24807907 (-) True AMCG00018893
TU149337 other downstream 1817365 22804345 ~ 22806338 (-) True G119144
TU149076 other downstream 2510008 22080464 ~ 22113695 (-) True G118936
TU148773 other downstream 3925876 20696834 ~ 20697827 (-) False G118727
TU148729 other downstream 4017883 20603518 ~ 20605820 (-) False AMCG00018794
TU149755 other upstream 450790 25075398 ~ 25077580 (-) False AMCG00018898
TU149831 other upstream 510163 25134771 ~ 25171644 (-) True G119538
TU149840 other upstream 561599 25186207 ~ 25187408 (-) True G119545
TU150163 other upstream 2188872 26813480 ~ 26814073 (-) True G119827
TU150237 other upstream 2606265 27230873 ~ 27242574 (-) True G119893

Expression Profile