RNA id: AMCG00018891


Basic Information

Item Value
RNA id AMCG00018891
length 1603
RNA type mRNA
GC content 0.41
exon number 5
gene id AMCG00018891
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 24821217 ~ 24826738 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGAGCAACactgacagagagggagaagctACACTGAACATCCTGATCTGTCAGTGAGCAAGCGAACCgatttgttctatttttattttatttttattttttccccctgattTTTCAGACTTCTTGAAGATTTGTCACATAGTTTATTGTTGGTGTCCAGACTAGTATGAACTCAAAGTAAAAGTGTAGTATTGAAAGTAGTAATTTAATGCAGACAACATCACTCAATCACACTTTCCCATGCTGCTGTTAATGACCCACCTCAAAGGCCATTGTGTAGGAATGGTGTTACGTTTTTACTATTGTTCCCAAGCTCCAGTGTGGGTTTATTACGGCTCTTTCACAATAACGAAGCTTTGTCACTAAGTATGATGGTAGTCAACAACACTGCTTTAAAGTCCCCTATTGTGAGCACTGTTTGTAGAGagatcttttattttctctctctctctctctctctctctctctttctcttttcttttaatagcaTAGAGAAGGAAAGTCAGTCTGCCACTTCTGCACACGGATACAAAATTGAATTTAGTTTGGTTGATTGGAGTTATTTCTGCTCCTGCTTCAGGAGGGGAGAATGTTCATCACGGTGTGCTTTGGGGACGATCAGAAGGAGCTGTTTAACCCAAATTGCAGAATCATTAACTTGATCCACTCCCTGAGAGAGAGGTGCAACCTTGAATGTGAAgCAGAGTGTGTGGACCTCGTTGATGAGTCAGGGGAGCTGGTGAACTTCAGTGAGAGGCAGAGCTCCCAAGAATATGCCAGCAGCTTTCTGAAGGAGAGACACAGCTACATCCTCATTAAAGTCACCAAAGGAGAGGGCAGTGAGGGGAACAAATATGAGTCACTGTTACTGAACCTTGGGAAGAGTTACCCGGAAGTAGCAGACCTTCTTAAGAAGCTGTCGAACCCTCGCAGAGACCAAGATAAGAAGAGCAGCTCCATGAGAGGACGTCTTCAGAAGGAACTACCTGCGGTCCAGCAGACAAAGAGCAAAGCAGCTGTCAGCCCCAGGAAGAACGCCAGCAGCACTAGAGTTAACCAGAGCTTCACTCAGAGTTGAGCTGGAGAGAAGGAATCCATCTGGATCTCAGCTACAGAAGGAAGACATTCctaatgcaaaaacatttttatgtctTCAGTATGTTTACATACTGGTAATTCAGTCATGAAACTAGGACTGGTGTCATggttaatttaaagtgtttatgACCGATTACAGTTTAGAATAGTTTGGGTTTACAGTTCAatgcaaattaaaccaaaatcaacacaacaaaaaacaggtcCAAAGTAGGAACTGTTAAAATGATTTCTCCATGAACCAAAACACACATATTGCCATTCCACCTCAAAAGAAGGCATGAAACTACCTCCACTTTCATGATTTTCTACCCAAATGTAAATACAGCcactaaaacaaaaacgtatGGAGATGATCTTCAAAAACCCCCCTGAGCCCTGTTACCTCTCATCTGGACCCAGCAAGTAGTGCTTTagctttgaataaaaaaaatgttcaaagggatttcttttatctttttttttctagacTTTCCCTGCAGACTCACTGAGCATTTACAGGGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149635 lncRNA downstream 212755 24519413 ~ 24608462 (-) True G119382
TU149638 lncRNA downstream 252918 24566146 ~ 24568299 (-) True G119384
TU149444 lncRNA downstream 1709697 23109601 ~ 23111520 (-) True G119235
TU149381 lncRNA downstream 1836445 22984184 ~ 22984772 (-) True G119181
TU149380 lncRNA downstream 1837651 22982866 ~ 22983566 (-) True G119180
TU149701 lncRNA upstream 10049 24836787 ~ 24842121 (-) True G119426
TU149749 lncRNA upstream 218213 25044951 ~ 25045344 (-) True G119466
TU149859 lncRNA upstream 435624 25262362 ~ 25333175 (-) True G119557
TU149903 lncRNA upstream 652272 25479010 ~ 25479524 (-) True G119600
TU149919 lncRNA upstream 745316 25572054 ~ 25578122 (-) True G119615
AMCG00018893 mRNA downstream 13310 24799019 ~ 24807907 (-) True AMCG00018893
AMCG00018890 mRNA downstream 44517 24756869 ~ 24776700 (-) True AMCG00018890
AMCG00018887 mRNA downstream 85066 24715823 ~ 24736151 (-) True AMCG00018887
AMCG00018889 mRNA downstream 130403 24660466 ~ 24690814 (-) True AMCG00018889
AMCG00018888 mRNA downstream 162196 24652459 ~ 24659021 (-) True AMCG00018888
AMCG00018892 mRNA upstream 29476 24856214 ~ 24876807 (-) True AMCG00018892
AMCG00018894 mRNA upstream 62893 24889631 ~ 24934952 (-) True AMCG00018894
AMCG00018895 mRNA upstream 134340 24961078 ~ 25007942 (-) True AMCG00018895
AMCG00018896 mRNA upstream 244804 25071542 ~ 25073116 (-) True AMCG00018896
AMCG00018898 mRNA upstream 248660 25075398 ~ 25084586 (-) True AMCG00018898
TU149337 other downstream 2014879 22804345 ~ 22806338 (-) True G119144
TU149076 other downstream 2707522 22080464 ~ 22113695 (-) True G118936
TU148773 other downstream 4123390 20696834 ~ 20697827 (-) False G118727
TU148729 other downstream 4215397 20603518 ~ 20605820 (-) False AMCG00018794
TU149755 other upstream 248660 25075398 ~ 25077580 (-) False AMCG00018898
TU149831 other upstream 308033 25134771 ~ 25171644 (-) True G119538
TU149840 other upstream 359469 25186207 ~ 25187408 (-) True G119545
TU150163 other upstream 1986742 26813480 ~ 26814073 (-) True G119827
TU150237 other upstream 2404135 27230873 ~ 27242574 (-) True G119893

Expression Profile