RNA id: AMCG00018893


Basic Information

Item Value
RNA id AMCG00018893
length 2080
RNA type mRNA
GC content 0.59
exon number 11
gene id AMCG00018893
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 24799019 ~ 24807907 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTCTTTAACCTGCTTGCAGAGCTTCCCCACGTCAGGATGGAGGAGGAAAACACCCAGCTCTGTGCCAACTGCAAACGTGAGATCCCTGCAGTGAATTTCACCATGCATGAGATGCACTGCAGGCGCAACATCAAGCTGTGCCAGCACTGCCAGGAGCCCGTGCCCCACTCCGACATGGAGCAGCACATTCAGGAGGAGCACATGCAGGTGCAGTGCAAGTGTGGTGTGAATatggagaaaaaacagatgGAGAAACACCAGcagctgcagtgcagCCTGCGTCTGATGAAGTGCCAGTTCTGCGAACTGGAGGTGCCCTTCAGCCAGCTGGTCGAGCACGAGGACTACTGTGGGGCACGAACTGAGCTCTGCCCCAAGTGCCAGCGCAACGTCATGGTGAAGGAGCTGGACATGCACCCCCTGCTGTGTGGTACCCAGCAGCCTGAGGAGCGCAACAACGCGCGGGCCAGGCCTGGCCCGGGGGAGCGCCCGCCTGAGGTCTGGTTTGAGACTCACTCCATCAGGAACCTGTTGAGGACCCAGGAGCTGCAGAACAGCAATCTGCCACCTGGCCCCCGCGTCCCCAGGCCCCTCGAAGGCCGGGTCCATAACAGCACCAGGGCGGTGGGGGCGTCCCTCAGGAGAAACACTGCGCCCAGGAACAGGGACCAGAACATCATGGATGAAGAGGATATTGTAGAGCGTAACAGAGGCAGGGCAGGTGTGGACGTCCCGGGAGGTGAGGCCTCCAGTCTGGACTACCTGCTGGCCCTCAGCCTGCAAAACAACCACCGTCGCGAGCCGTGGACGGAGGGCTGGGGGGACCCTGTGAGTGGGATGACTGGAGCTGCTCACCTAATTTCTGGTGCCCTTACTGGCCTGAGTGGTCTGATCCAGCCCCTGGTCACGGAGCTCACACACACCCCCAACAACAACATCAGCGCCGGGCAATCAGcGGTGTCTGACACCATGCTGCCCTGCGAGTTCTGTGAGGAGCTGTTCCCTGCCGAGGACCTCATTCTGCACCAGACTGGCTGCAGCCCTGCTAGTGCCTTTGCTTCCTTCAGTAAGAGAGCCCCCTCCCCTCTTCAAGATGACTGGCCCTTTCGGGGTGGGCAGGGGCCTCTCTACCGCTCCTacagcccccccagcccccccagcCCGCCTCGCCACGCCTCCTCCCTGTCCCACAGCCCTCCTCTACAGCCACAAGAGGGTGCCGTTCTCATCCCCTGCGAGTTCTGCGGAGTCACCCTCGAGGAGGACGTCGTCTTTCATCACCAGGACAAATGTGGCTTCCGTCCCGGAACTGCTTACCCCGTGGAGAAGCCCTCTGCCCGGACAGCACTTCCTCCCAAAGTGGACAACACGCAACAGAGCCCTCCAGACCTGCTGAGGCCACGCCTGCGACACCAGGCTGACCTGGTCCCTGAGGCCCTGGAGCGGGTGACAGTGAGGCCCACGGCCCTGGTGGCCCCAGCCAGAGAGAAGCTGGGCAAGGCGACGGTGGGCTCCAGAGAGCGCTGGAAACCAGAGCCCCAGGACACCTTTTCTAGCAGGGAGGCCCACTCCAGCACCCAGATCAGGAGGCCTCAGAGATCGATGGAGCCTGGTGTCCGGGGTGTACACCCACCCTGCCCTGAGGACCATAAACGCAGCTTCCCACAGACCGGCCCCACACCGTCGCCAGGAGGAAGAGTAGATGGACGGAGCAACTCGAGGAACTCTGGGACATCAAAGcCTCGTATCCCCAAGGTGCGCAACGTGGAAAAGGAGGAAGAGTGACGGCTGTGCCTCGGGGGACTGCAGCACTGCTGGATCTCGGGAGGCTTCTGGTCCACTATGCAACACATTCGAGTCCCATGTGTATCGTGTGTAAATGATCACTGTCTTTTCCTATACTTCTGGGCTCAGTAAACGTGAGCATCGGGATTTTAATACAACACGTATAGTTATAACCCGAGTTTTACAACCATTTTGTATAGCCGGTTTCATGGCTGGGGACATTTTAAATGGCGGAAACTGGAGCGGTAGtacatatcttaaaaaaaaaaaaaaaaaaaaaaaagtgagtaAA

Function

GO: NA

KEGG:

id description
ko03460 Fanconi anemia pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149635 lncRNA downstream 190557 24519413 ~ 24608462 (-) True G119382
TU149638 lncRNA downstream 230720 24566146 ~ 24568299 (-) True G119384
TU149444 lncRNA downstream 1687499 23109601 ~ 23111520 (-) True G119235
TU149381 lncRNA downstream 1814247 22984184 ~ 22984772 (-) True G119181
TU149380 lncRNA downstream 1815453 22982866 ~ 22983566 (-) True G119180
TU149701 lncRNA upstream 28880 24836787 ~ 24842121 (-) True G119426
TU149749 lncRNA upstream 237044 25044951 ~ 25045344 (-) True G119466
TU149859 lncRNA upstream 454455 25262362 ~ 25333175 (-) True G119557
TU149903 lncRNA upstream 671103 25479010 ~ 25479524 (-) True G119600
TU149919 lncRNA upstream 764147 25572054 ~ 25578122 (-) True G119615
AMCG00018890 mRNA downstream 22319 24756869 ~ 24776700 (-) True AMCG00018890
AMCG00018887 mRNA downstream 62868 24715823 ~ 24736151 (-) True AMCG00018887
AMCG00018889 mRNA downstream 108205 24660466 ~ 24690814 (-) True AMCG00018889
AMCG00018888 mRNA downstream 139998 24652459 ~ 24659021 (-) True AMCG00018888
AMCG00018885 mRNA downstream 174411 24623703 ~ 24624608 (-) True AMCG00018885
AMCG00018891 mRNA upstream 13310 24821217 ~ 24826738 (-) True AMCG00018891
AMCG00018892 mRNA upstream 48307 24856214 ~ 24876807 (-) True AMCG00018892
AMCG00018894 mRNA upstream 81724 24889631 ~ 24934952 (-) True AMCG00018894
AMCG00018895 mRNA upstream 153171 24961078 ~ 25007942 (-) True AMCG00018895
AMCG00018896 mRNA upstream 263635 25071542 ~ 25073116 (-) True AMCG00018896
TU149337 other downstream 1992681 22804345 ~ 22806338 (-) True G119144
TU149076 other downstream 2685324 22080464 ~ 22113695 (-) True G118936
TU148773 other downstream 4101192 20696834 ~ 20697827 (-) False G118727
TU148729 other downstream 4193199 20603518 ~ 20605820 (-) False AMCG00018794
TU149755 other upstream 267491 25075398 ~ 25077580 (-) False AMCG00018898
TU149831 other upstream 326864 25134771 ~ 25171644 (-) True G119538
TU149840 other upstream 378300 25186207 ~ 25187408 (-) True G119545
TU150163 other upstream 2005573 26813480 ~ 26814073 (-) True G119827
TU150237 other upstream 2422966 27230873 ~ 27242574 (-) True G119893

Expression Profile