RNA id: AMCG00018897


Basic Information

Item Value
RNA id AMCG00018897
length 2707
RNA type mRNA
GC content 0.48
exon number 18
gene id AMCG00018897
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 25091131 ~ 25117419 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AACCATGCCAAGCTATTGAAGGTTTCCAAGACAGAGAAATCACGGATCATTATTTTACGATTGTGGATATTGGTTAAATATTGTGTGGAACAGTGGTGCCAAAATGAGCGAGCAGATCAAAGCTATAGTAGAGCACCTCAATAAGGAGCCCTTCAAGAAAAACTTCAACCTCATAACGTTTGACTCCCTGGAGCCCAtgcagctgctgcagcttctCAACGATGTTCTAGCAACTATCGACCCCAAGCAAGACATTGATATTCGAGAGGAAATGCCAGATCAGATGGCAAGGCGAATGTTTTCCCTGCTGGGAATGCTGAAGTACAAACCTCCCGGTAATCCATCAGACACAAGCAATTTCCGTCAAGGTCTGGTGACTGGCAGCAAACCTGTCATTCACCCCATCCTGCACTGGCTGCTGCTGAGGATCAATGAACTGAAGAAAAGAGCTTACCTGGCCCGTTTCCTCTTTAAGCTGGAGGTGCCTGCCGAGTTTCTGCAGGACGATGTCGTTGCAGACACATATCATCAGTATGAAGAGCTAGTGGAGAGCTTCAAGAACTATCACAAGGAATGTGAATCGCTGAAGAGCTCTGGCTTCTCCACAGCAGAAATCAGAcggGACATTGGTTCCATGGAAGAAGAAAAGGATCAACTGATCAAGAGAGTGGATCGCCTGAAGAAAAGGGTGGAGACGGTGTCCAATCACCAGCGCATGCTTGAGCTGGCCAGGCAGCTGCGggtggagaaggagagggaggagtcACTGGCCCACCAGAAGCAAGAGCAGAAGAACCAGCTGTTTCACGCTGATCAAAGGCTACAGAGATCCCAACAGCAACTTAAGGACCTGCGACAGGCAGCGGCAGATGCAAAGCCGGAGAGCTTGATGAAGAGACTGGAGGAGGAGATCAAGTTCAACATGTACATGGTTTCCGACAAACTGCCCAAGGAGCTGGAGAGCAAGCGGACGACGGTGCAATACTTGCAGAAAGTGGTCGCCGAACCTGTTATGGGACAGGCGGAGCTGGGCGAGCTGGAGGACAAGATTCGTGAAATGAACATTCAGATTAATCAGCTGATTGAGAAGAGGATGATGCGAAATGACCCGATAGATGACAAACACTCTCTATTCAGACAACAGGCCTCCATCATCTCACGCAAGAAGGAGGCCAAGGCggaggagctgcaggaggcccGGGAGGAGCTGGCCAGTGTGGAGAAGGAGCTGGCACACAAAAACAGCCAGGCCCGCGACAGTGATGGCGCCGAGGTCATCAAGGGTGATGAGTTCAAGAGGTATGTGAGTAAACTGCGCAGCAAGAGCACGCTGTACAAGAAGAGGAGGCAGGAGGTAGCGGAGCTCCGGGCGGAGTATGGCGTCCTGCAGAGGACTGAGGACATCCTGAAACAGCGCCACGAAGCCCTACAGCAGCAGCTGCAATCCATGGAAGCCAAGAAGGGCATCTCTGGGTACAGCAACAcacaggaggagctggagagggTGTCGTCTATCAAGAGCGAGCTGGACGAGATGAAGGGCCGTACGCTGGACGATATGTCTGGGATGGTAAAGAAATTGAATTCTGTGATAGCAGAGAAGAAGGCTGCCCTTGCTCCTGAGGTGCGAGGCCTCAGAGAGCAGAACACAGAAGAGGAAAGCAGATACCATTACATCAACTGCATGAGACAGGtcattgaaatgcaaatgcagaGAGCAGCGGATGAAATGCGGGCCTATGTGTCTCCAGATCCGCAGGAAAGGCGAAAGGCTGTGAGGGAGCAGTACACCAAGAATATCACCGAGCAGGAAAGTCTGGGCAAGAAGCTGCGTGAGAAACAGAAGGCAGTACGAGAGAGCCACGGCCCCAACATGAAGCAGGTGAAGATGTGGCGGGACTTGGAGCAGCTGCTGGAGTGCAAGAAGCAGTGCCACCTGAGAGCACAGAGCCAGGCCTCCATTGGACACGTCATCCAGGAGGGGGGCGAGGACAGGCTAGTCCTCTGAGCCCTCCAGCACTGCTCTCCCCTGCAGCCACCACCTTCCACCACACCCATGTAGCCATGCCCCTCCTAAAAATACCTCAAATGGGATTGATTATTGTTCGCAGACCGTGACAGACAAGTCTGAGGTTGTAACCGTGCAATTGCAAGCCTCACTTATTGCTTAATTGACCCTCATGTGTTGAACTTTGACCCAGTTCTAAGATCACAAAACCAAGCccaatgtttctttaaatatgtttctcCTGGACACAATTAAATCAACAGGAAGGGAGCACACCATGGAGCAAATCAGGTTGTCTGTAGTATAAAGCAATTTTGTAAATAAGTGCACTTGATTTATTACCAAAGCAGCAATATGTACATGCAATtacaaactttgtattttatttttgatcttaTTCAGAGAAACccaaagtatgtattttatcacttcataataatttttttaatgttcacacTGTAGCTCTACATCTCTGAAATAGCAGTCTTTGTTTTAGGGTAAAATTGTATCTTTGTATTAGTAGAagtgtattaaatgttttggtatacaccacaattaaattaaaaactttgtgtgtgtatagtatGAAATGATTGCCAGTAAGCAGAGAAACACGAATTAACACCAAATTTAATTAAGATGTACAGCTTAGGGCTGGGCgaaatgacttaaaaataatatctcgatatttttagaagt

Function

GO:

id name namespace
GO:0048793 pronephros development biological_process
GO:0032006 regulation of TOR signaling biological_process

KEGG:

id description
K19677 IFT81; intraflagellar transport protein 81

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149704 lncRNA upstream 240081 24850836 ~ 24851050 (+) True G119429
TU149685 lncRNA upstream 255422 24799950 ~ 24835709 (+) True G119416
TU149688 lncRNA upstream 281312 24807747 ~ 24809819 (+) True G119419
TU149585 lncRNA upstream 492117 24537666 ~ 24599014 (+) True G119354
TU149814 lncRNA downstream 185767 25303186 ~ 25313495 (+) True G119523
TU149822 lncRNA downstream 213971 25331390 ~ 25338189 (+) True G119529
TU149876 lncRNA downstream 368426 25485845 ~ 25488149 (+) True G119574
TU149934 lncRNA downstream 597514 25714933 ~ 25718248 (+) False AMCG00018922
TU149981 lncRNA downstream 921860 26039279 ~ 26078413 (+) True G119669
AMCG00018899 mRNA upstream 846 25084176 ~ 25090285 (+) True AMCG00018899
AMCG00018886 mRNA upstream 377603 24709674 ~ 24713528 (+) True AMCG00018886
AMCG00018876 mRNA upstream 713203 24372640 ~ 24377928 (+) True AMCG00018876
AMCG00018850 mRNA upstream 2220358 22862980 ~ 22870773 (+) True AMCG00018850
AMCG00018853 mRNA upstream 2256047 22820669 ~ 22835084 (+) True AMCG00018853
AMCG00018908 mRNA downstream 19168 25136587 ~ 25144798 (+) True AMCG00018908
AMCG00018902 mRNA downstream 54066 25171485 ~ 25188842 (+) True AMCG00018902
AMCG00018901 mRNA downstream 86253 25203672 ~ 25213155 (+) True AMCG00018901
AMCG00018900 mRNA downstream 128226 25245645 ~ 25261282 (+) True AMCG00018900
AMCG00018909 mRNA downstream 169989 25287408 ~ 25294157 (+) True AMCG00018909
TU148883 other upstream 3901885 21187956 ~ 21189246 (+) True G118815
TU148789 other upstream 4334911 20755629 ~ 20756220 (+) False AMCG00018802
TU148663 other upstream 4487816 20601956 ~ 20603315 (+) True AMCG00018792
TU148657 other upstream 4496992 20593366 ~ 20594139 (+) True G118636
TU148656 other upstream 4498115 20592736 ~ 20593016 (+) True G118635
TU149795 other downstream 116663 25234082 ~ 25267781 (+) True G119507
TU149874 other downstream 366878 25484297 ~ 25485446 (+) False AMCG00018913
TU150090 other downstream 1343201 26460620 ~ 26461227 (+) True G119762

Expression Profile