RNA id: AMCG00018900


Basic Information

Item Value
RNA id AMCG00018900
length 1726
RNA type mRNA
GC content 0.47
exon number 11
gene id AMCG00018900
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 25245645 ~ 25261282 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTACAAACACGCGTGCGAGAAAGACGAATGGCGTTTGTTTACGCCACCTTACGGAATCATATGGGTCTGTCTTGACTAAATTAAACATCCaagtttatgtatgtatgtatttattttattttatttcatttcagtgcgtgagtaaattattttaaaaggaaaataataactgtaacACCATTTTCCCGCTCACTAAAACAACATCACAACGAATATATGGAACTTTGTCACCTAAGGAAAAACCACACCACACACTATGAAGTGTTTAATAACAGGAGCAAACGTGAAAGCATTTGGAAAAACAATCCATGCACTTGCACGTATTGGGGACGAGATATGGCTTGACCCCCTGGAGAAAGGACTGGCGATAAGTTCAGTGAACTCCTCCCACTCTGCGTATGCCTGCTTCCTGTTTTCCCCACTGTTCTTCCAGCAGTACTACACAGGGCAACAGTCCCCCTCAGACTCTGGAGATGGGAAGACAGTCCTCAAGTGCAAACTGGCTTTGAAGTCAATACTACCCCTCTTCAGATGCCTGGCAACTATTGAAAGGAATGTGGACCGATGTAAAATTGCCATTAACTTCACAGACGGCCGAGTGATTTTCCAGTTTTTCTGCAAGCACGGTCTAACCAAAACCCACAATCTGGGCTTTCAGGAGTGTGAATCTCTGCAGGCTGTGTTTCCCAGACATCTCTGTCCTAATGTCTTGAAGGTACAGGCCAGACATCTAGGAGAAATTGTGATGCACTTTCCAGTCTCACAGGAAGAAATCACTTTGACCGTGACTCCACTGAAGGTGAACTTCAAGAACTACTATGAAGAGGAAATGGCTTACTGGAAGAAGACCATGCACACAGAGGCCACCCTGCACCCAGATGAGTTTGAGTATTTCCAGGTCAGCCTGGACTCAGAAATAACCTTCTGCCTGAAGGAGCTGAGGGGATTGCTGTCTTTTGCGGAGTCCCATGGGTTATCGGTGTCCATCCACTTTGGAACAGCAGGAAAACCAGTGGCATTCAGCATAGAGGACATGGTGCTGGAGGCAAGCGTGGTGTTGGCCACTTTGACGGACCCCGAGAGCATTCGCATCTCCCAGAGAGACGGGTCCCAGCTGGAGGACTTCCCCAGGTGCAGAGGCCACATGACCCCCAGTGCCCCCCCAGCTGTAGACCATACCAATGAGATTCCACAAGCTGCTGCAGTGAGAGGCATGATTGCCATGGATACGTTCCACTCTCTGTTCTTCGGTGCGCTGTCCACGGTGCAGGTTGGCGCTCCCGTCCTGGTGCTGCCCAGTCTAGCGTGTTCCAGCGACACGGAGGAGGAGGCAGGCGAGGACAAGACCCAGCCCTACCAGGCTTTCCGATAGCTGACATTGCAGCTTACAGAACATCCTTCTAATTTCCCCACAATCACAGGGTCAGCACATTGTCAcatcattcattaatttagcCAGTTCGAAAAGGGTCCTTTAGACTCGAATCACAACAGTCAGTTCTGTTAAAGGCCACATTGTCACTCCAGATGCCTGCTGCAGAAGAAAGACTAAATTTTATCTTTAGGAGTTATGGTTGTTCTCAAACACAATCAATCAGTCCTCTTCTGTCCATCCTCAAGCTCTGGCTTTCCCTTCATTACAGTGTTTGTTTCAAAAACAGTCAGgcagttacatttaaaacccaTGCATGCTTTATTCTCGGGCTAACCATCAACTGTCTCTTAA

Function

GO: NA

KEGG:

id description
K10994 RAD9A; cell cycle checkpoint control protein RAD9A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149704 lncRNA upstream 394595 24850836 ~ 24851050 (+) True G119429
TU149685 lncRNA upstream 409936 24799950 ~ 24835709 (+) True G119416
TU149688 lncRNA upstream 435826 24807747 ~ 24809819 (+) True G119419
TU149585 lncRNA upstream 646631 24537666 ~ 24599014 (+) True G119354
TU149814 lncRNA downstream 41904 25303186 ~ 25313495 (+) True G119523
TU149822 lncRNA downstream 70108 25331390 ~ 25338189 (+) True G119529
TU149876 lncRNA downstream 224563 25485845 ~ 25488149 (+) True G119574
TU149934 lncRNA downstream 453651 25714933 ~ 25718248 (+) False AMCG00018922
TU149981 lncRNA downstream 777997 26039279 ~ 26078413 (+) True G119669
AMCG00018901 mRNA upstream 32490 25203672 ~ 25213155 (+) True AMCG00018901
AMCG00018902 mRNA upstream 56803 25171485 ~ 25188842 (+) True AMCG00018902
AMCG00018908 mRNA upstream 100847 25136587 ~ 25144798 (+) True AMCG00018908
AMCG00018897 mRNA upstream 128226 25091131 ~ 25117419 (+) True AMCG00018897
AMCG00018899 mRNA upstream 155360 25084176 ~ 25090285 (+) True AMCG00018899
AMCG00018909 mRNA downstream 26126 25287408 ~ 25294157 (+) True AMCG00018909
AMCG00018913 mRNA downstream 204809 25466091 ~ 25484837 (+) True AMCG00018913
AMCG00018915 mRNA downstream 272821 25534103 ~ 25544880 (+) True AMCG00018915
AMCG00018914 mRNA downstream 294174 25555456 ~ 25582394 (+) True AMCG00018914
AMCG00018918 mRNA downstream 323034 25584316 ~ 25592691 (+) True AMCG00018918
TU148883 other upstream 4056399 21187956 ~ 21189246 (+) True G118815
TU148789 other upstream 4489425 20755629 ~ 20756220 (+) False AMCG00018802
TU148663 other upstream 4642330 20601956 ~ 20603315 (+) True AMCG00018792
TU148657 other upstream 4651506 20593366 ~ 20594139 (+) True G118636
TU148656 other upstream 4652629 20592736 ~ 20593016 (+) True G118635
TU149874 other downstream 223015 25484297 ~ 25485446 (+) False AMCG00018913
TU150090 other downstream 1199338 26460620 ~ 26461227 (+) True G119762

Expression Profile