RNA id: AMCG00018901


Basic Information

Item Value
RNA id AMCG00018901
length 2636
RNA type mRNA
GC content 0.41
exon number 6
gene id AMCG00018901
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 25203672 ~ 25213155 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGGACCAGCGCGCATGCGCTTTAGGGAGCTTAAAGCACTCCGGGAGCCCTAAATGTGTCAGACAGGCAGCGAAAGAATCAGCAGGAAGGAGTCAGTagatttcatttctttttttatttatatatcagtATTCTTTTACAGATAaccacatcattttttttaacaagtccCCATACCATGACTGAACAATCAGCGCTTCTGCTTCGAAAACAACTGGCagAGCTCAACAAGAACCCAGTGGAAGGCTTTTCAGCTGGCTTGATAGACGACGATGACATCTACAAGTGGGAAGTTGTCATCATAGGGCCGCAGGACACGCTATTtgaagGAGGATTTTTCAAGGCATACCTGACTTTTCCCTATGACTACCCATTGCGGCCTCCGAAGATGAAGTTCATTACAGAGATCTGGCACCCCAACGTTGCAAAGAACGGTGATGTGTGCATCTCCATCCTGCATGAGCCCGGGGAGGACAAGTTTGGCTACGAGAAGCCAGAGGAGCGCTGGCTGCCCATTCACACAGTGGAGACCATCATGATCAGCGTCATCTCCATGCTGGCAGACCCCAACAGTGACTCGCCAGCCAACGTGGATGCAGCTAAGGAATGGAGAGAGGACCCTAATGGTGAATTCAAGAGGAAGGTTGCACGGTGTGTACGGAAAAGCCAAGAGATGGCTTTTGACTAGACTGCCCGTATTGCTACTGAGATCCAGGatcTAGGAAATAACTCTTCCCGAAGAAAATGTGCTCTTCAATAAAGGATATGTATTTTGCCCTCTTGCtttggaggggggggtggggaagaggggggacaaaaaaaaaaaaagagccacGTGTGGTTGTTCTGAAGAAAGCTGAATGGAGAGAACCTACCAGCTGATGATTTCCTGCCTGGagttgtacatttaatttatttattttgaagagtGTTATAAACAATGTAAGATAAGTCACTATTGTAAATGAACTTGCTTTTTTATCTGCTGCTGAACGGTTTCTACTTTATACCAGGTTTCTTATGCAATTTCTTGGGTTTTGATTGTTTCTGGTGCTTGGACAAGCTGTGAACgaggagaattaaaaaaaatcccattctGTATCCCTCACCCTGCTATTTTTTTACTCCCACAATTTTGAAACCCCTATTGGAAAAATGTAACCCCTTTCGATGTGTTATCTACCCCAAAAAGGCTGTAACATTATCAGTTAATCACAGCTgccttaaatgttttgttttcttaacagAAAAAGCAATGGCCAGTGTGTGCTTCTGGTTTCAAGCTAGGCTCCTTTTGGCAAGTAGGCTGTGGTATCAAGCTAACCATGTACATGTTTCCAGCAGTGTCAAAACCATTTTTTGTTTACTCTTTTGGTGACTGGCAAACCAAACTTAAAAAGTCCTAACATGAACAAGGTACTGACACTAAGCTGGAAAGACATTTTTGaagctgtgaatttgttttgcatACCATCCCACACCACCGACTGAAGTTTACCTCAAGTCTTCTGACACTGTTATATTAGAGCACTTCTTAATCTTAAggtttattttgtggttttatcTCCTAACTTAGCTTTCTTGGCAAATGCACCTTGGCCTAAGTGAAAAAGGGGCcatctttttatttacatttatttttagcatcaCTTTAGTAGAAGCACACTTGCATTAGTCTCcatgtaaaattgtaatttctATGATTTAGGTCACTCTTTAGGTCAGAGTCTTGTGGCATATCCAGTTACATTTTTGTCATCCTCTTTGTTCTGCTTATGGTTGACATGCTGACTAACACAGAGAAAATAGCATCTGAAAGGAAGTTGCATAAAAGGAAATGAGACAATGTAGGTGTTTTGGCTTACCAAAAAAGGTCTGGCTTGAATCTATTTTTGCTGTAATAGTTCATATTGCACAGTAAATACCTAGTTCCCATTGTATTCTTCATAATGAGAACCATCTAAAATGCTTTTACAGGTTGCAATATGTTATAGGAAGTCAGTAAAATTTGAACTAAAGCAGTGGGAACGGAGCACAAGCATACAATATGATTGAAAATATCAGGCCTGAATGGCTCCTTTTAATGTGAATCTTAAAATTTGCACAGTTTACCAGGTTTTCTGTAAGTAAATACTGAAATGGTTTCTACTGAGTGTAGTATACAACAATGTGAAGTCTGCTTGTCATTGAACAACAAGCCATTGCATAGCAGGTTCTTTTAAAGCCATTCTTGCCATAGGGGGGATGTGGCATATGTTGGCACCGGCAAGATTTGCAGACCATTTTCCTTTGCACcatttcctttttgtcttttgCTTCCATGCTTGAATTTGAAGAGAAAAGCATTTCCTTCCCATTCTCCCAGACTGCCATAACTGACCGGTTTTCACTGTCTTCATCCAAAATAACTTGGCATGTCAAACTACATCTTAAAGCAATACAACTAGGTGGAGGGGGGAGAGCCAATTTTTaggttgtattttctttttcagatttcCCCCTGCCAAGTGAGTTTGTCTGCTGGTttctctgctgtgtttttagTTTGATCATCCTTGGCCATCCtctccttttgttttatgtacatttgtatttaatctgagcccaataaaatgtgtaaaaactcTCCATTTCCT

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016881 acid-amino acid ligase activity molecular_function

KEGG:

id description
K10575 UBE2G1, UBC7; ubiquitin-conjugating enzyme E2 G1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149704 lncRNA upstream 352622 24850836 ~ 24851050 (+) True G119429
TU149685 lncRNA upstream 367963 24799950 ~ 24835709 (+) True G119416
TU149688 lncRNA upstream 393853 24807747 ~ 24809819 (+) True G119419
TU149585 lncRNA upstream 604658 24537666 ~ 24599014 (+) True G119354
TU149814 lncRNA downstream 90031 25303186 ~ 25313495 (+) True G119523
TU149822 lncRNA downstream 118235 25331390 ~ 25338189 (+) True G119529
TU149876 lncRNA downstream 272690 25485845 ~ 25488149 (+) True G119574
TU149934 lncRNA downstream 501778 25714933 ~ 25718248 (+) False AMCG00018922
TU149981 lncRNA downstream 826124 26039279 ~ 26078413 (+) True G119669
AMCG00018902 mRNA upstream 14830 25171485 ~ 25188842 (+) True AMCG00018902
AMCG00018908 mRNA upstream 58874 25136587 ~ 25144798 (+) True AMCG00018908
AMCG00018897 mRNA upstream 86253 25091131 ~ 25117419 (+) True AMCG00018897
AMCG00018899 mRNA upstream 113387 25084176 ~ 25090285 (+) True AMCG00018899
AMCG00018886 mRNA upstream 490144 24709674 ~ 24713528 (+) True AMCG00018886
AMCG00018900 mRNA downstream 32490 25245645 ~ 25261282 (+) True AMCG00018900
AMCG00018909 mRNA downstream 74253 25287408 ~ 25294157 (+) True AMCG00018909
AMCG00018913 mRNA downstream 252936 25466091 ~ 25484837 (+) True AMCG00018913
AMCG00018915 mRNA downstream 320948 25534103 ~ 25544880 (+) True AMCG00018915
AMCG00018914 mRNA downstream 342301 25555456 ~ 25582394 (+) True AMCG00018914
TU148883 other upstream 4014426 21187956 ~ 21189246 (+) True G118815
TU148789 other upstream 4447452 20755629 ~ 20756220 (+) False AMCG00018802
TU148663 other upstream 4600357 20601956 ~ 20603315 (+) True AMCG00018792
TU148657 other upstream 4609533 20593366 ~ 20594139 (+) True G118636
TU148656 other upstream 4610656 20592736 ~ 20593016 (+) True G118635
TU149795 other downstream 20927 25234082 ~ 25267781 (+) True G119507
TU149874 other downstream 271142 25484297 ~ 25485446 (+) False AMCG00018913
TU150090 other downstream 1247465 26460620 ~ 26461227 (+) True G119762

Expression Profile