RNA id: AMCG00018903


Basic Information

Item Value
RNA id AMCG00018903
length 1689
RNA type mRNA
GC content 0.42
exon number 7
gene id AMCG00018903
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 25213639 ~ 25217823 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGTTCAGTTTCCCTGGCGGAAGTGGTTTGCTCATCCACTTCCTGCTGCTTCAGTGCTGGGTGGGACAGCGGAAACAGTGCACTGGTTTAGACTGACAGCTAATTTTTTCGGCTGGTAATAGTTGAAAATACTTGTCCAAAATGCCGGCTTACCATTCGAGCTTGATGGATTCCGACACCAAAATGATCGGTAACATGGCTTTACTGCCCCTGAAAACCCAGTTCAAAGGACCGGCTccgagagagaCTAAAGATTCTGACATCATTGATGAAGCCATCTACTATTTTAAAGCCAACGTCTTCTTCAAGAACTATGAAATCAAGAATGAAGCTGACAGGACCCTGATTTACGTGACTCTGTACATTTCTGAATGCCTCAAGAAGCTGCAGAAGTGTAACTCCAGGGGccagggagagaaggagatgtACACCCTGGGCATTACCAACTTCCCTATCCCTGGAGAGCCGGGCTTCCCTCTTAACGCCATGTACGTCAAGCCAGGCAACAAGCAGGAGGATGAGGTGATGAGGGGCTACCTGCAGCAGATCAGACAGGAGACCGGCCTGCGGCTGTGTGACAAAGTCTTCGACCCCGCGACAGACAAACCCAGCAAGTGGTGGATGTGCTTCGTGAAAAGGCAATTCATGAACAAGAGCCTCTCTGCTCCAGGGCAGTAAAGCAGATCAAAGGTTGACCTTTACAGTGGgatgcaacttttttttttcccttgtgtctgtctgtgcatatTTATCCtcccaatactttttttttttatacaggggttaaatgtattgaaacttAGCAGCGTTCTATCTGGACTGCttcagtaaaaatgttaaactggtGCTTAATTAAAACAGTACAGATCTACCCCAGTGGTACCCCAGTACTTTCAATAGGCTCATTGGACTGGGGCCACTTTCAGGTGATGCATATTCCATgtcccaccaccaccaccagatCTTATGATATTCCTAATCTGTGCTGCTTCTTGGAAGATTTTTTTCTCAATAATGCCCCGCTCACTCTGCTtccagaggaaaacaaaaatcaaaaacaaacctgtGACTTATATAGGGTTTTTATTCATCCTGTTTATATAATAGTGCCATTTCAGCTGCAAATTTGCTTGTTTTGGATTAactacaataaaatactgtttttgcacattgtttttcCTCAACCGAAGCAGGGGCAGTTTGGTTACATTTTCATCCACATTGGGGGTTGTGTTAATGAACTGTATACTAGGCATAGGCTCAAATACTCAAAAGGATGTTAGTATGATTACTTGTGAATTCTGGGAGAGAATACAAATTAAGCTTTTgtctatattaaataaactgtgtgACATTATCCTAAGGGGTGTGACATTTGAAATCACACTGTACCTCTAGCCTCCCCCGTTTTAgcatgaacattaaaaaaaaaaaaaaaaacggggggaaaaaaatagcaTATTCAAGGagggaaaacatttcaaatgccctactatatacacattacaaaaaGTTAATTCCAATATCTGGTACAGTTGTATAGCAATAATACTAGGGGGCATATTTGTACCCATTATGTAGATCAGACTTGCATAATGTGGAGGTGTATTCTGGGTAGGATAATGAGGTTTACTATATATTATACCTGCTTTTCTGTTGTGTGGATAGAGACTGCTTACTGGGGTCTTGG

Function

GO:

id name namespace
GO:0034314 Arp2/3 complex-mediated actin nucleation biological_process
GO:0005885 Arp2/3 protein complex cellular_component

KEGG:

id description
K05756 ARPC3; actin related protein 2/3 complex, subunit 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149749 lncRNA downstream 168295 25044951 ~ 25045344 (-) True G119466
TU149701 lncRNA downstream 371518 24836787 ~ 24842121 (-) True G119426
TU149635 lncRNA downstream 605177 24519413 ~ 24608462 (-) True G119382
TU149638 lncRNA downstream 645340 24566146 ~ 24568299 (-) True G119384
TU149444 lncRNA downstream 2102119 23109601 ~ 23111520 (-) True G119235
TU149859 lncRNA upstream 44539 25262362 ~ 25333175 (-) True G119557
TU149903 lncRNA upstream 261187 25479010 ~ 25479524 (-) True G119600
TU149919 lncRNA upstream 354231 25572054 ~ 25578122 (-) True G119615
TU149942 lncRNA upstream 372749 25590572 ~ 25656954 (-) True G119632
TU149947 lncRNA upstream 387208 25605031 ~ 25606144 (-) True G119637
AMCG00018904 mRNA downstream 9964 25193164 ~ 25203675 (-) True AMCG00018904
AMCG00018898 mRNA downstream 129053 25075398 ~ 25084586 (-) True AMCG00018898
AMCG00018896 mRNA downstream 140523 25071542 ~ 25073116 (-) True AMCG00018896
AMCG00018895 mRNA downstream 205697 24961078 ~ 25007942 (-) True AMCG00018895
AMCG00018894 mRNA downstream 278687 24889631 ~ 24934952 (-) True AMCG00018894
AMCG00018906 mRNA upstream 2281 25220104 ~ 25225859 (-) True AMCG00018906
AMCG00018905 mRNA upstream 21074 25238897 ~ 25244280 (-) True AMCG00018905
AMCG00018907 mRNA upstream 48925 25266748 ~ 25285927 (-) True AMCG00018907
AMCG00018912 mRNA upstream 76281 25294104 ~ 25301702 (-) True AMCG00018912
AMCG00018911 mRNA upstream 85714 25303537 ~ 25315212 (-) True AMCG00018911
TU149840 other downstream 26231 25186207 ~ 25187408 (-) True G119545
TU149831 other downstream 41995 25134771 ~ 25171644 (-) True G119538
TU149755 other downstream 136059 25075398 ~ 25077580 (-) False AMCG00018898
TU149337 other downstream 2407301 22804345 ~ 22806338 (-) True G119144
TU149076 other downstream 3099944 22080464 ~ 22113695 (-) True G118936
TU150163 other upstream 1595657 26813480 ~ 26814073 (-) True G119827
TU150237 other upstream 2013050 27230873 ~ 27242574 (-) True G119893

Expression Profile