RNA id: AMCG00018909


Basic Information

Item Value
RNA id AMCG00018909
length 2610
RNA type mRNA
GC content 0.50
exon number 14
gene id AMCG00018909
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 25287408 ~ 25294157 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTAGCAACCTGTTTACGTTGAATACGAAAAAATGGCGCTGTTGCTATGGACTtcaattttctgtatttttgcgATCACCGCTCATACACAGGTTTCTACTACATTTCAGACACCCACCGGCGATATCAGCACAGCATCTGTAAAAGGTAACGAATCAGTTACCGATGTAAAAGAACTGAACACCACAACGGAGATCGCTGCTCCATCCGTCCCAAAAACAACAGGAGCGGGTCCCCAATCGGCGAGCACCGGGGAAACAGTAAAGGTGGACACCACCACCAATGCTACAGAAGCGACTCTCACAGTCTCCCCGTCGAAAACGACAACCCGGACAACAATTCATTCAACCGCAATAACTACAACCACGGTCCCCTCCACGAAATCGCTGCCTCTCTCCGGTGCCCTCCCTCCTCCGATAACTAACCtttccctCTTGTGTCCGTGCAATACGATGGACAATCAATGCGATGTCAACTGCTGCTGCGACCTGGACTGCGCTGGAGACCTGGCGCTTTTCACGTCTTGCACGGTGCAGAAAGTCATTGCTGACCCCCAGCTCTGCAGCCAGCAGGCTGTCCTCTACTCTTTGAACACGACTGCGGACGGTTTTGCACAGGTACAGTCCACTGCCATGGAGGAGGTCAACCCAAACGTCTTCTGTATACAGACTGCCAACTATATGGCAGCCCTGGAATTTGCCACCCCAGAGGTGCCCACTGAGGGTAACTTCGACAGTCTGTTCCAGAAATTCGTTGGGTTCTTCTTCAGCTCTTCcagtgggagagagacagatgttGTCTCGAGCAGAGCAAATGCCCAAACTGCCAGTGGCTATCTGTATGCCGATGTAATTCAGACAGTAGACAAAGATGGGATCCAAGGATTTCTCACGCTGCCAGCCCCCTCTGTCACCTCTCAGTGCACTGACGCTAACCCAGCTGACTGTGCCAACGTGCCTGCCCTGAGCCCCCACAACTACCTGCAGGACAGAATCCTCTCTatgaAAAACAATGGCAGTGAGCTTGTCAACATCTGGGTGAGCTCTGTGACACTGCAGAGCCTCAATGGGACGCGCATTCGACTGAACTCCACTGACATCACAGCCTACAGCCCGGGATGGGACAAAAACTCTGTTATCTACGAGATTGAATACCATGAAACCGGGGCCATTGTGAATGCAAAAGTGGCCTTTACTCTGGGTGCAGTTGACCGTGACATGCTGCCACTACAGCAGGactttcaaattattttcacgCAGGCAAGCACACATCCAGTCCCCTTGAGTGGAAATCCTGGCTATGTGTTTGGGCTCCCTCTAGTGGCTGCTGGTCACAAGCAGAATACTGCGCTTTGGGTTTTGTCCTTGACCGTCTCTTGCACGTCTGGCATTTATCAGAGTGCAAACCGGTTTGGGGGACTGACCGTCCTGAAAAGTTCAGGCATTCAGGACTGTCTGAACAGCTCTGGGGAGAGGAGTCCAGTCCTGTTTGGGGTGAACGTGGTGTCAGGATGTACGCTCAGGGTGGACAGCTCTGACAATTGCACAGTGCTGTCTGAAGTGATCCTGGGAGTGCTGAGGGGACAAAGTTTCCCCCAGTACGTGGCTTCCTTTGGGAACTCTCAGCCCCAGGAAGTCTTGGACTGGGTGCCAATCAAGACTGTGAGCAGCGTGTTGAGTGCCCCGAGCTGTAGTGTTCCCCTGTCTGTTCACCTCGAAGTGAGATGGACTCTGTATGGGTCCCTGGTGAACCCACAGGCTCAGATCGTCAACGTGACTGAAAGGATCTCGGCTAACTCCAGTAACTTGCAAGCTCTGGCTGAACCATCTGGGCTTCTGGGACTTTCCAGCACGGTGACGTTCATTGCAGTGTCTGCCCCAGCCCAGCCGGAGTACAAGGCCCCACCCACCATCGATGCCTCACTCCCCTTCGACTTCTTCTTCCCCTTCGTGTGACGGACAGGTGCTGGGGGTCTCTTAGGAGGCGGGCTGTAGAGCTGGACTGATGTATACTAAGGTCTCTTCCCTAGCACCTCTGCACTGAAACCTCCAGGGAAGGGCTGTTGCAGAAATTTGATTGTATGTAACTGGAACACTGGACATCACTGAAAGGGAAGATACAACACACTagagcaggggtctccagcTCCATTCCTGGCTTTTGTTCCACCCCAGCCTTCAGTTACAGGCCCAAGCTGATTAACTGCAAAACGTCAGACCATCAAATCAGAACAACTTGAAATGTCATTCGTCAGGATCttaatttgcattcatttgCAGACCACATCCTGTTGTCGAACCAAAGCCTAGCCCCTCCAAGCCTATCTTTTGTGCAGCTACTACAGTCCTGTGAGCGAGTGAAAACCCAAAGATGATCTGGATTGTTCCATGTTTGTTAATGATTGTCAAGTAGGTCCTGATCATTTCTAGTGTGTTTGTTCTTTTCCTCAGAAAGCCCTTGAGGatgtaaaaactgtaaatggTGTCACTAcagactatttatttttgaaatgtcaaTGATGTATATATCTGAATGGTTATTTTTGTACATGTTGGGGTGTGTTTTGATACAGCTTTAATAAACTTTTAATATCATATTGCTTGAACatgat

Function

GO: NA

KEGG:

id description
K19382 TCTN1_3; tectonic-1/3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149704 lncRNA upstream 436358 24850836 ~ 24851050 (+) True G119429
TU149685 lncRNA upstream 451699 24799950 ~ 24835709 (+) True G119416
TU149688 lncRNA upstream 477589 24807747 ~ 24809819 (+) True G119419
TU149585 lncRNA upstream 688394 24537666 ~ 24599014 (+) True G119354
TU149814 lncRNA downstream 9029 25303186 ~ 25313495 (+) True G119523
TU149822 lncRNA downstream 37233 25331390 ~ 25338189 (+) True G119529
TU149876 lncRNA downstream 191688 25485845 ~ 25488149 (+) True G119574
TU149934 lncRNA downstream 420776 25714933 ~ 25718248 (+) False AMCG00018922
TU149981 lncRNA downstream 745122 26039279 ~ 26078413 (+) True G119669
AMCG00018900 mRNA upstream 26126 25245645 ~ 25261282 (+) True AMCG00018900
AMCG00018901 mRNA upstream 74253 25203672 ~ 25213155 (+) True AMCG00018901
AMCG00018902 mRNA upstream 98566 25171485 ~ 25188842 (+) True AMCG00018902
AMCG00018908 mRNA upstream 142610 25136587 ~ 25144798 (+) True AMCG00018908
AMCG00018897 mRNA upstream 169989 25091131 ~ 25117419 (+) True AMCG00018897
AMCG00018913 mRNA downstream 171934 25466091 ~ 25484837 (+) True AMCG00018913
AMCG00018915 mRNA downstream 239946 25534103 ~ 25544880 (+) True AMCG00018915
AMCG00018914 mRNA downstream 261299 25555456 ~ 25582394 (+) True AMCG00018914
AMCG00018918 mRNA downstream 290159 25584316 ~ 25592691 (+) True AMCG00018918
AMCG00018919 mRNA downstream 307762 25601919 ~ 25611337 (+) True AMCG00018919
TU149795 other upstream 19627 25234082 ~ 25267781 (+) True G119507
TU148883 other upstream 4098162 21187956 ~ 21189246 (+) True G118815
TU148789 other upstream 4531188 20755629 ~ 20756220 (+) False AMCG00018802
TU148663 other upstream 4684093 20601956 ~ 20603315 (+) True AMCG00018792
TU148657 other upstream 4693269 20593366 ~ 20594139 (+) True G118636
TU149874 other downstream 190140 25484297 ~ 25485446 (+) False AMCG00018913
TU150090 other downstream 1166463 26460620 ~ 26461227 (+) True G119762

Expression Profile