RNA id: TU149874


Basic Information

Item Value
RNA id TU149874
length 1150
RNA type TUCP
GC content 0.47
exon number 1
gene id AMCG00018913
representative False

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 25466091 ~ 25485446 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGTCCAATTTCCCTGCCTGCTGAAGAAGGAACGTGAGGAGGGGGCTGCCTACCGAGAGCTGTTGCCTACCCAGCGCTGTCCCAAGAGCCTCCTGGAAGATGGAGCGCTGTGCAGTAGAGTATCAGCATCTTTCCCGGGATCCCTCTCTCCCGATGTCCACCAGCGGCCCGGccagtccaggcaggagagcgAGGACCCTGACAAGACATCCTCTGACCCGGTCAGCTTCAAGGCTGCATCGGAGCCCTCACGGGGCAGTCTGGAGGTGTCCCTGAACTCCCCCTCGGCTGCCTCCTCCCCCGGCCTAATGATGTCTGTCTCCCCCGTCCCATCATCCTCCGCTCCTATCTCCCCGTCCATGCCCAGTGCCACCACCCCCATTCCCGCGAGCCAGAGCTCAGACTCGCTGCCGCCACTCCACAACACCAAGCTCAACAAGAGCACCCAGAGACGCAACGAGAAAATGGCCAACCTCAACAACATCATCCACAGGCTGGAGCGGGCCGCCAACCGAGAGGAGACCCTGGAGTGGGAGTTTTGAGGGTTCTGTCCCGGTCcatattttccctttctttcttttctgtttttttagattttataaAGAACACAAACTGCATCCCTAACCGGAGGACTCTTAAAGAGTACGTGTTACCTTGCAGGGGGATGCTCTTGAAGATGCTTCCCTTGCATTTCAGCTAGTACCTCCTCAAAACGGCCTACTTCTTACCTGCCTGGACCTCACTTTGAAGGATGTGGAAAACTGCGGAGCGTCGTTTTAACACTTAAAAAGAATgcaggaaaaaatgtaaaacagaactCCTCGAGATTacttttagaaaagaaaaaaaaaatatttataaatgtgttttaggtattttaataatggattctactttgaaatatatttaacagccctagctgttttgttttaaaaaaggaaaaaaacaaacagaaaaaagacaacCAGACTCTGCAGCTGTTGTGTCATTAAATGCACACTGAAGTCCTGTAGTTTGCCGATgtatgagattaaaaaaaaaagacttttgTCTTAAGCCATCAAAAAAGCactatgattatttaaaaaagactgACCAAATTTGCTAATTTTTGAATAGcagtttttcagattttttttttgtctttaaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149822 lncRNA upstream 146108 25331390 ~ 25338189 (+) True G119529
TU149814 lncRNA upstream 170802 25303186 ~ 25313495 (+) True G119523
TU149704 lncRNA upstream 633247 24850836 ~ 24851050 (+) True G119429
TU149685 lncRNA upstream 648588 24799950 ~ 24835709 (+) True G119416
TU149688 lncRNA upstream 674478 24807747 ~ 24809819 (+) True G119419
TU149876 lncRNA downstream 399 25485845 ~ 25488149 (+) True G119574
TU149934 lncRNA downstream 229487 25714933 ~ 25718248 (+) False AMCG00018922
TU149981 lncRNA downstream 553833 26039279 ~ 26078413 (+) True G119669
TU149998 lncRNA downstream 622023 26107469 ~ 26107849 (+) True G119682
TU150000 lncRNA downstream 627426 26112872 ~ 26113131 (+) True G119684
AMCG00018909 mRNA upstream 190140 25287408 ~ 25294157 (+) True AMCG00018909
AMCG00018900 mRNA upstream 223015 25245645 ~ 25261282 (+) True AMCG00018900
AMCG00018901 mRNA upstream 271142 25203672 ~ 25213155 (+) True AMCG00018901
AMCG00018902 mRNA upstream 295455 25171485 ~ 25188842 (+) True AMCG00018902
AMCG00018908 mRNA upstream 339499 25136587 ~ 25144798 (+) True AMCG00018908
AMCG00018915 mRNA downstream 48657 25534103 ~ 25544880 (+) True AMCG00018915
AMCG00018914 mRNA downstream 70010 25555456 ~ 25582394 (+) True AMCG00018914
AMCG00018918 mRNA downstream 98870 25584316 ~ 25592691 (+) True AMCG00018918
AMCG00018919 mRNA downstream 116473 25601919 ~ 25611337 (+) True AMCG00018919
AMCG00018921 mRNA downstream 143291 25628737 ~ 25642468 (+) True AMCG00018921
TU149795 other upstream 216516 25234082 ~ 25267781 (+) True G119507
TU148883 other upstream 4295051 21187956 ~ 21189246 (+) True G118815
TU148789 other upstream 4728077 20755629 ~ 20756220 (+) False AMCG00018802
TU148663 other upstream 4880982 20601956 ~ 20603315 (+) True AMCG00018792
TU148657 other upstream 4890158 20593366 ~ 20594139 (+) True G118636
TU150090 other downstream 975174 26460620 ~ 26461227 (+) True G119762

Expression Profile