RNA id: AMCG00018917


Basic Information

Item Value
RNA id AMCG00018917
length 1197
RNA type mRNA
GC content 0.57
exon number 10
gene id AMCG00018917
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 25547542 ~ 25553092 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCGACTCTGTTTACAGTTGGAGCGCACAGCTGTGGTCACTATGAAGCCCGGCGATTACACTGTCATTTATTACTAATTGTCATCCCATGTATCGTGCTGCTATGGCCGTGGACAGCTGTTGGTGCTGGATGTCCATCATCTCGGTGCTGTGGGGCCCGTCACTGTGGTCAAGCCTCGGAGTTTCGGGGGAGCGCGTTGCCTTGGTGGAGGTGTTTCTCCGGGACCGGCCGGGATCCACTCTGCTGCAGGGATCTCCGCTGGACGGGGAAAGCGCCGTTGACCGCGACCAGAAGAGCCAGGGCCACAGCCGCGAGTGCGTCGAGGGCAGCCTGCGGCTGgttcaggttcagggAGAAGAGGTAGATCTCCAGATGGACTCAGAAGCAGAGGTGCCCTGGATTGGAGTGGTTCCTGTCAAGCTAGACGAGAGGGAAGCACCCCAAGGCAACCAGGAGTCCTTTGCAGCTGCAGTAGTTAACAAGATGAAAAGAGCGCTGGTTCTGGGAGCCTCAGCCCTTCTCATCCTAGCGCTGAATCAGAACACCATCCGAGAGATGGATCTTTCCCAGGTGCTCTCCAAGCCAGTCATTGTGATCCAGACCTCAGAAAACGTCACAAGGCTGATTGGGGCTCTGCTCAGGGGCCTGCGGGCGACAGCAAAGATCACATACAAGTCCATCCTGCAGGATAATCTGGGGGCCACTCTGACCCTTTGGTCAAGCTGTGGCCGGTCCAGGGGGGGGCTCTACGGGGAGTGGCAAGGGGTCATCTGCACTGGAGAGACCAATTCTCAGGTTCAGAAATACCTCCAGCAGCTGTGGAATACAGTTCTCCTGGTGGCTCTGATTCTGTGCACTGGGGTGATAGTGCAAGCGCGCTGGCAGTACAGACACAACCAGCTCAACGATGACATGGAGTTACACCCAAAACAGGACATTGTGAAACGTCTGGCTGCCTTAAAAACGAGAAAGTACTACCCGCCCAAGACACGCAGCGAGCAGGGACAGGCCGGGGAGACGGACAACTGTGCGGTGTGCCTGGAGCCCTTCAGCAAGAACCAGTGTTTGAGGGTCCTGCCGTGTCTTCACGAGTTCCACAGAGACTGTGTGGACCCCTGGCTGCTCCTTCAGCAGACGTGTCCCCTCTGCAAGCGCAGCATACTGGCAGTGCAGACCCTACCTGTGTCTCTGAACTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149903 lncRNA downstream 68018 25479010 ~ 25479524 (-) True G119600
TU149859 lncRNA downstream 214367 25262362 ~ 25333175 (-) True G119557
TU149749 lncRNA downstream 502198 25044951 ~ 25045344 (-) True G119466
TU149701 lncRNA downstream 705421 24836787 ~ 24842121 (-) True G119426
TU149638 lncRNA downstream 979243 24566146 ~ 24568299 (-) True G119384
TU149919 lncRNA upstream 18962 25572054 ~ 25578122 (-) True G119615
TU149942 lncRNA upstream 37480 25590572 ~ 25656954 (-) True G119632
TU149947 lncRNA upstream 51939 25605031 ~ 25606144 (-) True G119637
TU149966 lncRNA upstream 165494 25718586 ~ 25718976 (-) True G119655
TU149986 lncRNA upstream 467135 26020227 ~ 26068649 (-) True G119672
AMCG00018916 mRNA downstream 14186 25489444 ~ 25533356 (-) True AMCG00018916
AMCG00018910 mRNA downstream 209489 25331301 ~ 25338053 (-) True AMCG00018910
AMCG00018911 mRNA downstream 232330 25303537 ~ 25315212 (-) True AMCG00018911
AMCG00018912 mRNA downstream 245840 25294104 ~ 25301702 (-) True AMCG00018912
AMCG00018907 mRNA downstream 261615 25266748 ~ 25285927 (-) True AMCG00018907
AMCG00018920 mRNA upstream 43444 25596536 ~ 25600663 (-) True AMCG00018920
AMCG00018925 mRNA upstream 791538 26344630 ~ 26356608 (-) True AMCG00018925
AMCG00018926 mRNA upstream 814258 26367350 ~ 26410785 (-) True AMCG00018926
AMCG00018929 mRNA upstream 898632 26451724 ~ 26485315 (-) True AMCG00018929
AMCG00018928 mRNA upstream 1070732 26623824 ~ 26625548 (-) True AMCG00018928
TU149840 other downstream 360134 25186207 ~ 25187408 (-) True G119545
TU149831 other downstream 375898 25134771 ~ 25171644 (-) True G119538
TU149755 other downstream 469962 25075398 ~ 25077580 (-) False AMCG00018898
TU149337 other downstream 2741204 22804345 ~ 22806338 (-) True G119144
TU149076 other downstream 3433847 22080464 ~ 22113695 (-) True G118936
TU150163 other upstream 1260388 26813480 ~ 26814073 (-) True G119827
TU150237 other upstream 1677781 27230873 ~ 27242574 (-) True G119893

Expression Profile