RNA id: AMCG00018919


Basic Information

Item Value
RNA id AMCG00018919
length 2578
RNA type mRNA
GC content 0.49
exon number 17
gene id AMCG00018919
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 25601919 ~ 25611337 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCAATTCATTACTTTAATAGAGAGAACAACCGGTTGATTCCCTCTAATTACTTGACAGACTGCTTCTTTTACACGGTTTGGTTTCAGTGAACCCGGATAATAGACCACATGACCAATTAATTATTGCGTATCAACGAGTATAAAGTCTCACTTAACTAACTTCAATTTCCCTATAAAAGCAGGCGAGACAGATGCATGTTATTAATATCACAATGGCTTTTCTGTGGGGTATTGTAGTGATGGTGGTCCTTTATTGTGTGGTGATCAAAGCACAACCAGATGTGACTGTGGAGTGTAGGGTGGATTCCTTGAGCGTCCTTGTGGTACTGAAACCGGGCTCCCCTTCCCCTGTCCAGTCTGAGGGGCTGCTTCTTGGAAACTGTCTTCCAGTGGTTAGTTCTGATGGCAGGACGGCGGTCTTTGAGTCGGACTTACTCGGCTGCTGTGCCATGCGTATGGCTACAGCTGGCTCACTGGTATACCAGTATACACTGACCTATATGTTGGTTTCAAGTACCAGTCTGAAGTCTGAGCCTATTGTCTGCTCATACACCATGCCTGTTGGCTGGGCTCCGCCACTGTATAATCCTGTTCTGGGTGATGCTGATGGGCTTGGAACTCTGGATTTCAGCATGGAGATCATGATGGATGACTTCAGTGGCCCCAGGATCTCCAGCACATTCTTCCTGGGATCCCTCATCCCCATCAAGGCTGCAGTAGACCAGCAGTTCCACATGCCTCTTGTCCTCTTCTTGGAGGAATGTGTCACTGCCACCTCTGCAAATCTGAGTGCTTCGACCCAGACCTACCCACTCATCTCAAACTATGGTTGCTTCTTGGACAGCCAGAGCTCCAACTCAAAGTTCCTACCCAGAGATCAGACCAATGAAATTAAACTATTGTTACAAGCCTTTACGTTCCCGAACAGTCAAGATGTTTATATCCACTGCCAGCTGGTGGCCTGGGACCCTCAGCAGCCTGGCCCCACTAAGAAAGCCTGTAACTTCAACAAAGGGAACAAAAGCTGGGAGTCTCTGGAAACCCCCACTCAGAATGGGTTGTGCAACTGCTGTGACTCCAACTGCAATCGGCGGAGGAAGCGAGCTGCAGGCATGGATGTGACTATCCAATGTGGGACAGACTCATTGTCTGTAAATGTGACACTCCAGAGGCGCTTTTTACCTCTGGACCCATCTGGTCTGCTCCTGGGAAATTGCCCCCTTTCTACAGTGGTGGATGTAGCTGGAGGGCAGGCTGTGTTCCAGATGGGGCTTTTGGAGTGTTGTTCCATGCGCATGGCTACTGCCAATGTCCTCACCTACAGTAATGTCTTGACCTACAAGCCCACAACATCTTCCTTCTACCCAACCCCATTCTCTATGCCTGTTGTGTGTGTCTACTCCAAACCTCCTGGATGGGCTCCTCCATTGTATAACCCTGCTCTGGGAGATGCTGATGGGTTTGGATATCTGGATTTCAGCATGGAGATCATGAAAGATGACTTCAGTGGCCCAAGAGTCTCCAGCACATTTTTCCTGGGATCCCTCATCCCCATCAAGGCTGCAGTGGCCCAGCAGTCCCACATGCCTCTGGTCCTATTCTTGGAGGAGTGTGTTGCTGCCACCTCTGCAAATCTGAGTGCTTCAAACCAGACCTACCCAATCATCTCAAACTATGGGTGTTTTGTGGATAGCCAGACCAGCAACTCCAGGTTCCAGTCTAGATCCCATTCTTCTGAAATCCGCTTATTTGTACAGGCCTTTAGATTTCTGGAGGGAGTGGATGTTTATATCCATTGTCAGCTGGCTGCCTGGGACCCAGCACTGCTCAATGATCCCACCAAAAAAGCCTGTAATTTCAACCAGAGTACTAGCAAGTGGGTGGATCCTGATGGTGCCCAGAGTGCCTTATGTGGCTGCTGTTCCTCCAGCTGCAATACAAGAGTCAGGCGAGATGCAGCTGAGCAGGGCCTGAGCCATATTACTGTCCTGGGACCTGTGAAGATCCTTGCTGAAGAACCAAGTGGTGCTTTGGAGACTGAGGCCCCTGCTGTGGTCATGCATGAGGGTGGCAAGTTTCCTCAGTGGGTGACCTTGGTGGCCTGTGCCCTGCTGGTGTTGGCTGTGCTGGGTGCCCTGTCTATGGTGTACTACTTCTGTGTGTGGCAGCGTGCTTCTGTGACCAGCAAGATGGGGCAAGAGCTGCTCATCCCTGTGCAGATTGATGACCTGCACAGGGCAGTGGGCATAATCCACTGCAGCTTCCCAAAGGAGTCCTATTGAACCATTTGTCTGTAAAGTTCATTAAACCACTTCCATGCAGTACCTTTGTCTCTTTACTTCTTTCAATTATGGGTCCTGCACCAATATATTTAGctcttgtatttgtttatgctAGCAAGACCTTGTTACTCGGTCTCATGGAATACTCAATTTGAAGGAGTTTGGGTAGATCtagaggtgtgtgtgtccccGTCCCCCCCCCACTCTAAAGTGGGTAGTGTAGCTTTATGGAGTCTTATGATCTTGGCTCTGATTTTTGGGTAGCATAGGCCTTTCCCATTTAACTAAGACCAAAT

Function

GO: NA

KEGG:

id description
ko04110 Cell cycle

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149876 lncRNA upstream 113770 25485845 ~ 25488149 (+) True G119574
TU149822 lncRNA upstream 263730 25331390 ~ 25338189 (+) True G119529
TU149814 lncRNA upstream 288424 25303186 ~ 25313495 (+) True G119523
TU149704 lncRNA upstream 750869 24850836 ~ 24851050 (+) True G119429
TU149688 lncRNA upstream 792100 24807747 ~ 24809819 (+) True G119419
TU149934 lncRNA downstream 103596 25714933 ~ 25718248 (+) False AMCG00018922
TU149981 lncRNA downstream 427942 26039279 ~ 26078413 (+) True G119669
TU149998 lncRNA downstream 496132 26107469 ~ 26107849 (+) True G119682
TU150000 lncRNA downstream 501535 26112872 ~ 26113131 (+) True G119684
TU150023 lncRNA downstream 665048 26276385 ~ 26276585 (+) True G119703
AMCG00018918 mRNA upstream 9228 25584316 ~ 25592691 (+) True AMCG00018918
AMCG00018914 mRNA upstream 19525 25555456 ~ 25582394 (+) True AMCG00018914
AMCG00018915 mRNA upstream 57039 25534103 ~ 25544880 (+) True AMCG00018915
AMCG00018913 mRNA upstream 117082 25466091 ~ 25484837 (+) True AMCG00018913
AMCG00018909 mRNA upstream 307762 25287408 ~ 25294157 (+) True AMCG00018909
AMCG00018921 mRNA downstream 17400 25628737 ~ 25642468 (+) True AMCG00018921
AMCG00018922 mRNA downstream 67340 25678677 ~ 25718426 (+) True AMCG00018922
AMCG00018923 mRNA downstream 454306 26065643 ~ 26077262 (+) True AMCG00018923
AMCG00018924 mRNA downstream 542318 26153655 ~ 26193484 (+) True AMCG00018924
AMCG00018927 mRNA downstream 820379 26431716 ~ 26438313 (+) True AMCG00018927
TU149874 other upstream 116473 25484297 ~ 25485446 (+) False AMCG00018913
TU149795 other upstream 334138 25234082 ~ 25267781 (+) True G119507
TU148883 other upstream 4412673 21187956 ~ 21189246 (+) True G118815
TU148789 other upstream 4845699 20755629 ~ 20756220 (+) False AMCG00018802
TU148663 other upstream 4998604 20601956 ~ 20603315 (+) True AMCG00018792
TU150090 other downstream 849283 26460620 ~ 26461227 (+) True G119762

Expression Profile