RNA id: TU149934


Basic Information

Item Value
RNA id TU149934
length 2914
lncRNA type sense_over
GC content 0.41
exon number 3
gene id AMCG00018922
representative False

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 25678677 ~ 25718426 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gAGTCAGGGAGAGAGGCTGCTTTCTCGAGAGGCCCCGGAGGAGCTCAAGCAGCAACCCCTAGCGCTGGGCTACTACGTCTCCACTGCCAAGGCTGAGGACCTGCCTCAGTGGTTCTGGGCATCCTGCCCGCAGGCGCAGTACCAGTGCCCCCTGTTCCTCAAGgctTCCCTCCATCACCACATCTCCATCGCCCAGACAGATGAGCTCATCTCCAACAAGACCACCCAGcggaccccccaccccctggacTCCAAGACCACCTCAGATGTGTTAAGGTTTGTCCTGGAGCAGTACAACGCCCTGTCCTGGCTCACCGTCAGCCCAGCCGGCCAAGACCGGCGCTCCTGCCTGCCTGTCCACTTGGCGGTCCTCACCCAGATGTACAACGCCATCCTCAACATGCTCTGACCCCCGCGGCGCCTCGCCCCCGGCCTGGCTCCTTTCTTGCATCTGTTAAACCAAATTTGAGAAACTGccaattacttttcatttatttatttattgttgttgttattattttcttactttttatttacaCTCAACTGTTTGTCTCTCAGTCCACCTTGCAAAATGGGCAGCCTGTAGTTCTGTAGATCAAGCACCACAAGAAAACATCCTCCCACTTTATTGCCATCCCTCAGGGCCAAAGCTGTAGTCAAGACAAACCACTTGAAAGAAACGGCACACAGAGTAGATTTTTTAGGTGCACCACTTCTAgaacttgatttttttttagcatctttaaaatttgatttatttttaaaattgcttaGTTTTCATACACAACATAGTAACAATTTTTGAACTTTTACAGCGTTTGTAGCTGACTAatgaaattgaatgtatttgtattattaataataatcattatacaTTCAGAATAATCAtacaggaagaaaatgtttttatccaatccaAAATCTTGAACCCTTCAAGTTCAATATATTTATGGCAAAAGATGTAATTTTGTGCTTTGTTGCCGGGCAGGTTTACCACAGAACGGGCTATAAATGTTTGCTCTCTGTGGTAGCTCCTACAACCCATATTGCTGGAGGGTGAAATGAAATTTGCACAGAAGTGACTGAAATCACCAAAAAGAGAATCCTAGCTGTCACTGTTACTcctgtcattttaataaaatagtttttcaatATGATTTCAATAGGATTCAGCTTTCTGACAGACTGGTATGCAACAAGTATCCCCCCCCACCAAGTTGTTTTATGAGGAAAAACTCACAGAAATTAATCTCCCTGGCTGCCTATTTTGGAAAAtcttaatgaaacaaaaaaaaacaaaaaaaaattaatgcaACGTGTAAATTGCATAGAACAtggaagacaaacaaacaaaaaagcatattGCTACAACTGGatgtgaattgtatttaaaaagaaggaagaaaatacCATTTAGACTCCCTACACATccctgcactgagagagaaatgTCACAGTTAAAGTGCAGGGGTCAGCGTCTTTACATTAGGAGGGAGATAAATAACTGCCACTGATTTCCAAAGTACTGTTGGCACAATCCAAATTAGCACCTACATTGTGGCTGCAATTTCAACAGCTGcattaatatcaatatatttatgttcGTGCACTTAATGAAAGCAttatcatataaaaatatataaaatatatttttgaaataaagaCTGTTTAAATATGGTGCATCTTGTTAAAGCCCAGAACAGAAGGTCCCTGTTTGGTGTCATTGGATGCATCGTAAAGACAATCCTCTGTTTTGGATCTCTTTCCAGAATGGGGTGGATtctcccagacacacacacacacatacactgacaatCTACAAAGGCTGGTTTCCCTATTGAAATGGCTCTAGGTGGTTAGCctttaaatgtgacatttctttCAAAGCCTTGTGTGGGTAAATGTCATCTGCCTGTTTCTCGGCTCATTTGTCTGTCTTGCCTAAACTCCTGTTTGCAGAAGTAAACACGGAAGCTTTCAGCCCAGCTCCTGTCAACCAAACAACCAACCAGTCTTCATCTGATAGTCGCCTTTGCTACAGAACAGTGCTTTACTGGATCAGTGTATACATGATGTACAAATGAACATATAGTTGTTACAGTGGATCTTGGACACTGGTCTTGCTAACCCAAAGGTCCCCAGCCCTCATTCTGGAGGGTCCAGCAAAGCTTCATCAGTCAAAAGGGATAGGAACTTAAATGACCCTGCAGGATTAGGGTCGGAGACCACTGGTTTGAGCCACATGATCAATACCTGTTGAACTAAGCAGACCCGTATCAGGTATGGCCATATCAAAAGCACTAAGATAGAACCAAGGCACTGATGTTTCTCATCAAGCATAACAGGTATCAAAACAGACTGGCAGATTCATGTATAATCTACATATCATATGGAGTTCAAGAGTGGTAATCATACCCACTGATACAGCCTTCAGGGTTATGTAAGTTGGCACATCTAGATCATCAAAATTATGAATGGACCTGCTCGGGAAGTATCCGTTGGGCATTCTTAGTGTAGGAAGCGCTAAACTGGGACAGACCGACAAATCACAGATAAACAGTCAGTGTGGCGGCAACAGACTTCGACTTCTTAAATGCAAAATTTGCTGTTCTTTCGAATAGGAAATGGCAAATAAATTACCTTGGAAACGCACTGCttacataatgttttatttttttatttcaattgttaCCAATTGGTTGTGGTATttctttcaaagaaaaacacaaattaaatcgGGGACAACGGAAACTAACATTTACGATGACATTTCAACtattttttatgaattaaattaatactaaaaataataaaataataattcaaggCCTTTTCCAAATTATAAAAAAGATTGCCTTGGAATACGAAAAGGAACCATTTTTTGGAAAGAAAAGTCAACTTAAAAAAATTGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149876 lncRNA upstream 226784 25485845 ~ 25488149 (+) True G119574
TU149822 lncRNA upstream 376744 25331390 ~ 25338189 (+) True G119529
TU149814 lncRNA upstream 401438 25303186 ~ 25313495 (+) True G119523
TU149704 lncRNA upstream 863883 24850836 ~ 24851050 (+) True G119429
TU149685 lncRNA upstream 879224 24799950 ~ 24835709 (+) True G119416
TU149981 lncRNA downstream 321031 26039279 ~ 26078413 (+) True G119669
TU149998 lncRNA downstream 389221 26107469 ~ 26107849 (+) True G119682
TU150000 lncRNA downstream 394624 26112872 ~ 26113131 (+) True G119684
TU150023 lncRNA downstream 558137 26276385 ~ 26276585 (+) True G119703
TU150076 lncRNA downstream 723945 26442193 ~ 26444060 (+) True G119750
AMCG00018921 mRNA upstream 72465 25628737 ~ 25642468 (+) True AMCG00018921
AMCG00018919 mRNA upstream 103596 25601919 ~ 25611337 (+) True AMCG00018919
AMCG00018918 mRNA upstream 122242 25584316 ~ 25592691 (+) True AMCG00018918
AMCG00018914 mRNA upstream 132539 25555456 ~ 25582394 (+) True AMCG00018914
AMCG00018915 mRNA upstream 170053 25534103 ~ 25544880 (+) True AMCG00018915
AMCG00018923 mRNA downstream 347395 26065643 ~ 26077262 (+) True AMCG00018923
AMCG00018924 mRNA downstream 435407 26153655 ~ 26193484 (+) True AMCG00018924
AMCG00018927 mRNA downstream 713468 26431716 ~ 26438313 (+) True AMCG00018927
AMCG00018934 mRNA downstream 1154602 26872850 ~ 26875837 (+) True AMCG00018934
AMCG00018936 mRNA downstream 1329518 27047766 ~ 27048707 (+) True AMCG00018936
TU149874 other upstream 229487 25484297 ~ 25485446 (+) False AMCG00018913
TU149795 other upstream 447152 25234082 ~ 25267781 (+) True G119507
TU148883 other upstream 4525687 21187956 ~ 21189246 (+) True G118815
TU148789 other upstream 4958713 20755629 ~ 20756220 (+) False AMCG00018802
TU148663 other upstream 5111618 20601956 ~ 20603315 (+) True AMCG00018792
TU150090 other downstream 742372 26460620 ~ 26461227 (+) True G119762

Expression Profile