RNA id: AMCG00018926


Basic Information

Item Value
RNA id AMCG00018926
length 1134
RNA type mRNA
GC content 0.50
exon number 8
gene id AMCG00018926
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 26367350 ~ 26410785 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATggatttttccttctttattttctttgtgataTTCACCTTCGTGTCCAGCAAGCCATGTGAGATTTCCAGTGGAAATGAAGAGCAAATTCTGTCCCTGAACAAGAAGCTGCTACGCTCTGTAAAGGAGGCATCAGAGGGACCCAATCCCAGCCTGCATCTTGGTCTACGACTCTCTCAACATCATAGCCTAGCCTCGGAGAAAGACTACTTGCTCAAGCTAAAGAAAGAGCTTGATGGCATCATCGATAGGTCCCAGTCTAAACTGCAGCCTATTACAGGTCTCCTGGCCCTGTATACCCTAGCCCTGCGTGCTTCCTGTGAGGACCTGAACACCAGCAGCCGGCCGTTGACCAATTACTACCAGTATGGACTGGGAGTGTTGGCACTGTGTGTAGGTGGAGTGCGCATCAGTTCCCACGTTGTTCACAAGCTCATACAGGCACAGAGTAATGGTGGCTTCATGCACAAGGACATTCTCAGCATTGaCACAGTGGCCATGGCAGCACTGGCTTTTCAGTGCCTGAAGGAATCGGATGAACAATACGACGGCAGTCAGATTGAGAAGGCTCTCAGTGCAACACAGCAAGACATCCTGAATTCACAGAGTGACACAGGGTTGTTTGGGAATGTCTTTAGCACACCATTAGCAGTGCAGgcTCTGCAGGCTGTGGGTTCAGAAGGAGCTCTATGTTCTTCTGCCATGCAAGTACTGACGACTGAGATCGGCCGGGGGACTTTCCACAATCCCATGGCCATGTCCCAGCTACTTCCCATCCTGCACTACAAAACCTACTTGGATGTTAGGAGCATGGAGTGCAACGGCGAGGATGATAGCCTGATTCTGGAGTCAAGGACCTCTGTTGTTGAGCTGAGCCAAGAGAGTGTAACTGTTCGGCTGGTGGTGGAGATCACTGATGCCAGCCCTAACATCTACAAAGTGATAGTGCCCTTGGGCTCATCACTGCTTGATGTGCTGAAGGAACTACACAAACAGAAGCCCCAGGAGTTTTCGTTTGAGACAGAGACAAGTCTGTGGGGACCCTACCTGAGTGTGGTAAATGGACTTCGGGCTCGCCAGGCAGATAGAACCTTCTGGCAGCTGCTCCAGTCTCCTGACTCACCTCTTATAGAA

Function

GO: NA

KEGG:

id description
K14619 TCN2; transcobalamin-2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150034 lncRNA downstream 24272 26319977 ~ 26343078 (-) True G119713
TU150009 lncRNA downstream 216279 26119422 ~ 26151071 (-) True G119691
TU150001 lncRNA downstream 254197 26112864 ~ 26113153 (-) True G119685
TU149987 lncRNA downstream 288946 26076658 ~ 26078404 (-) True G119673
TU149986 lncRNA downstream 298701 26020227 ~ 26068649 (-) True G119672
TU150088 lncRNA upstream 46596 26457381 ~ 26457825 (-) False AMCG00018929
TU150098 lncRNA upstream 49833 26460618 ~ 26461160 (-) True G119770
TU150103 lncRNA upstream 90216 26501001 ~ 26501920 (-) True G119774
TU150156 lncRNA upstream 366850 26777635 ~ 26779240 (-) False AMCG00018930
TU150157 lncRNA upstream 366850 26777635 ~ 26778640 (-) False AMCG00018930
AMCG00018925 mRNA downstream 10742 26344630 ~ 26356608 (-) True AMCG00018925
AMCG00018920 mRNA downstream 766687 25596536 ~ 25600663 (-) True AMCG00018920
AMCG00018917 mRNA downstream 814258 25547542 ~ 25553092 (-) True AMCG00018917
AMCG00018916 mRNA downstream 833994 25489444 ~ 25533356 (-) True AMCG00018916
AMCG00018910 mRNA downstream 1029297 25331301 ~ 25338053 (-) True AMCG00018910
AMCG00018929 mRNA upstream 40939 26451724 ~ 26485315 (-) True AMCG00018929
AMCG00018928 mRNA upstream 213039 26623824 ~ 26625548 (-) True AMCG00018928
AMCG00018931 mRNA upstream 322482 26733267 ~ 26771289 (-) True AMCG00018931
AMCG00018930 mRNA upstream 366954 26777739 ~ 26797720 (-) True AMCG00018930
AMCG00018933 mRNA upstream 414477 26825262 ~ 26825957 (-) True AMCG00018933
TU149840 other downstream 1179942 25186207 ~ 25187408 (-) True G119545
TU149831 other downstream 1195706 25134771 ~ 25171644 (-) True G119538
TU149755 other downstream 1289770 25075398 ~ 25077580 (-) False AMCG00018898
TU149337 other downstream 3561012 22804345 ~ 22806338 (-) True G119144
TU149076 other downstream 4253655 22080464 ~ 22113695 (-) True G118936
TU150163 other upstream 402695 26813480 ~ 26814073 (-) True G119827
TU150237 other upstream 820088 27230873 ~ 27242574 (-) True G119893

Expression Profile