RNA id: TU150156


Basic Information

Item Value
RNA id TU150156
length 1606
lncRNA type sense_over
GC content 0.34
exon number 1
gene id AMCG00018930
representative False

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 26777635 ~ 26797720 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTGACTGTTTTAGTGTTACATGATGAACTTGAAGAAGGGACATTCCAGCAGAATGGATACTGTTATGGTGTTTATAACTGATACATGAACTTTCAGTAACAGGACCCACTGTACATATCTGGACCAGACTGCAGATATATTGCCTCTTCCATTGGCTCTATACTGACCCCTAGTGCTTGAAGGTTTAACCACATTATTtgaaaactgattttgtttttttgtttttttgcacttgATAGTAAATTAAACGGGAAACAAAAAGTAATTGCCCTGTTGTAGGTGTACTACAGTAACTATATTAATGCATGTTGATGCTCAGGGAAAAAAAGCGTATGAAGTAATaagacaaaaggaaaatgtgcaCCTCACCCTCTGACCTTTCCTTCAGAAGTCTGAATTCTCAAGCCCCGTTTACCATCCAGTCCTGAACTCAGATTGTGAGTTGTGATTAAATGTGTGTCCattattgcatgtttttttttaatggatattaAATGGCATACCATCAGTGTGTTTTccaaattcatattaaattacattacatatttcttaaaggtggtggtggtgataaggggggcgggggggaggtTAACAGTAACGGAAAACTAATAGAAGATCAGTGATAGGTTTTAATTCAAGACCTTTTGTCTGATGaagtttctttcagttttgaatATGATGGAATGTCATTTAAACCTTTTAACACTGTGTTTTCTAATGGCTAAAGGTGTATAGTGTAATTTTAATcccttttacttttttgttttaattgtccaATATTGTTCAATATTTCTATTGACTTTCACCATGAGTTTTGTATTGAATATCAGTATCAATTGTAGTATATATCTTGGCTAAACAAAGACCAGAAGCTACCATTCATATTaaccattcaaaataaataaataacaatgttcTGGAAGTAGTAACTATGAATcattagttttttatttatttagccaaGGTGTTTAGTTAACCTGGGACTTCATACATGCAGTCTCCAAATTAAAAAAGTTCCTTCTTGAAGAAATTGGctttacagcatttcaaatTTGGGTGAAAGGGATCACAGTCAATTTCATtaaggaatttaaaaatgtaacactgcCATAAAGCCatgattttaaaaggaataaagTAGACGTCAGTGGAAGCTTATCTACTGGATCTGTGCCTACAGTATTCCCATGGAGATTCTGATTTTAGTTGTTGGATATTGTTAGAGCGTTTTTTGTGTAATGAGTGGAAATTATGTTGTGGAAagttctatttatttatttatttgcattctaAATTGTTGCCCTAGGGAATTATTGGTGGATTATATTGTATGGTATGTTCAAATGGGAATGGAAGACCTTTGAGTGAATGGTaaactttatttctttatgtatcTGTTCATTGACACTGCTTTCAGAAAGTCTGAGGAAGTGGTCTTCTGATTTGGCAAGACCTTTCTAGATAATATGTAGCTCTGGATGTGcacttctgtttgtgtttctgtttgcagTCCTAATCTCTCTGTCCATTACATTGATACACTTTGTCTCCTTGGCGGGTTATGTAAAGGTTCTAGGCTGCTGGATACTTGAATAAAGATTAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150103 lncRNA downstream 275715 26501001 ~ 26501920 (-) True G119774
TU150098 lncRNA downstream 316475 26460618 ~ 26461160 (-) True G119770
TU150088 lncRNA downstream 319810 26457381 ~ 26457825 (-) False AMCG00018929
TU150034 lncRNA downstream 434557 26319977 ~ 26343078 (-) True G119713
TU150009 lncRNA downstream 626564 26119422 ~ 26151071 (-) True G119691
TU150161 lncRNA upstream 31644 26810884 ~ 26812556 (-) True G119825
TU150162 lncRNA upstream 33874 26813114 ~ 26813426 (-) True G119826
TU150235 lncRNA upstream 443266 27222506 ~ 27278009 (-) True G119891
TU150257 lncRNA upstream 576585 27355825 ~ 27356032 (-) True G119912
TU150274 lncRNA upstream 686147 27465387 ~ 27468649 (-) True G119929
AMCG00018931 mRNA downstream 6346 26733267 ~ 26771289 (-) True AMCG00018931
AMCG00018928 mRNA downstream 152087 26623824 ~ 26625548 (-) True AMCG00018928
AMCG00018929 mRNA downstream 292320 26451724 ~ 26485315 (-) True AMCG00018929
AMCG00018926 mRNA downstream 366850 26367350 ~ 26410785 (-) True AMCG00018926
AMCG00018925 mRNA downstream 421027 26344630 ~ 26356608 (-) True AMCG00018925
AMCG00018933 mRNA upstream 46022 26825262 ~ 26825957 (-) True AMCG00018933
AMCG00018932 mRNA upstream 65530 26844770 ~ 26869193 (-) True AMCG00018932
AMCG00018938 mRNA upstream 93654 26872894 ~ 26943014 (-) True AMCG00018938
AMCG00018937 mRNA upstream 163824 26943064 ~ 27063981 (-) True AMCG00018937
AMCG00018940 mRNA upstream 437922 27217162 ~ 27224946 (-) True AMCG00018940
TU149840 other downstream 1590227 25186207 ~ 25187408 (-) True G119545
TU149831 other downstream 1605991 25134771 ~ 25171644 (-) True G119538
TU149755 other downstream 1700055 25075398 ~ 25077580 (-) False AMCG00018898
TU149337 other downstream 3971297 22804345 ~ 22806338 (-) True G119144
TU149076 other downstream 4663940 22080464 ~ 22113695 (-) True G118936
TU150163 other upstream 34240 26813480 ~ 26814073 (-) True G119827
TU150237 other upstream 451633 27230873 ~ 27242574 (-) True G119893

Expression Profile