RNA id: AMCG00018931


Basic Information

Item Value
RNA id AMCG00018931
length 2159
RNA type mRNA
GC content 0.53
exon number 16
gene id AMCG00018931
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 26733267 ~ 26771289 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGACTTCAATCGGTATCCATCCACGAGGCACAAGAACATACCGGACCGGTGctgcagtggaaaaacaaagagaGGAGAACTGAAACCTTGCAGACAAAATGACTGACTCCAAGTATTTCACAACTACAAAGAAAGGAGAGATCTTTGAGCTCAAGGCAGAGCTGAACAGCgacaagaaggagaaaaaaaaggaggCTGTGAAGAAAGTGATCGCGTCCATGACAGTGGGCAAGGATGTCAGTGCTCTATTCCCTGATGTGGTGAACTGCATGCAGACAGACAACCTGGAGCTGAAGAAGCTGGTGTATCTGTACCTTATGAACTATGCAAAGAGCCAGCCGGACATGGCTATCATGGCAGTTAACACTTTTGTCAAGGACTGCGAAGATCCCAACCCCCTAATCCGAGCACTGGCAGTAAGGACCATGGGCTGCATCCGTGTGGACAAGATCACGGAGTACTTGTGTGAGCCGCTGCGCAAATGCCTGAAGGATGAGGACCCCTATGTAAGGAAAACTGCTGCGGTGTGTGTGGCCAAGCTTCACGACATCAATGCCCAGCTGGTAGAGGACCAGGGTTTCTTGGACACTCTGAAGGACCTCATCTCAGACTCCAATCCCATGGTGGTGGCAAATGCTGTGGCTGCTCTTTCGGAGATTGCAGAGTCCCACCCAAACAGCAACCTGCTGGACCTCAACCCCCAGTCCATCAACAAGCTGCTGACAGCCCTCAATGAGTGCACAGAGTGGGGCCAGATATTCATCCTGGACTGCCTAGCCAACTACACCCCCCGTGATGACCGCGAGTCCCAGAGTATCTGTGAGCGTGTGACCCCTCGACTGTCTCATGCCAACTCGGCTGTTGTACTGTCTGCGGTCAAGGTGCTTATGAAATTCATGGAGATGCTTCCCAAGGACCTGGATTATTATGGCACACTCCTGAAGAAGTTAGCTCCCCCTCTGGTCACTCTGCTTTCAGCGGAGCCTGAACTGCAATACGTGGCCCTGCGTAACATCAACCTCATAGTACAGAAACGGCCAGAGATCCTCAAACATGAGATGAAGGTGTTCTTTGTGAAGTACAACGACCCCATCTATGTCAAGCTGGAGAAATTGGACATCATGATCCGTCTGGCTTCTCAGGCCAATATTGCTCAGGTTTTGGCTGAGCTGAAGGAATATGCCACAGAGGTGGATGTGGATTTTGTGCGGAAGGCAGTCCGAGCCATTGGCCGCTGTGCCATCAAAGTGGAGCAATCGGCAGAACGGTGCGTTAGCACGTTACTTGATCTCATCCAGACCAAGGTCAACTATGTGGTTCAGGAGGCTATCGTTGTCATTAAGGACATTTTCCGCAAGTACCCTAACAAGTATGAGAGTGTAATTGCCACACTGTGTGAGAACCTGGACTCCCTGGACGAGCCTGAGGCCCGGGCCGCCATGATCTGGATCGTGGGCGAATACGCTGAAAGGATCGATAACGCTGATGAGCTGCTGGAGAGCTTCCTGGAGGGATTCCATGATGAGAGTACACAGTTGCTTACAGCCATTGTGAAGCTCTTCCTGAAGAAGCCCACAGAGACCCAGGAGCTGGTGCAGCAGGTTCTCAGTCTTGCCACCCAGGCAAGGTTGATGATATTGCAGCATGCTTCTGAACCAGGAGGTGTCAATATCAAGTTCTTCAGAAAGGTGGCAGCCAAGGAGGTGGTCTTGGCTGAGAAGCCCCTGATCTCAGAGGAAACTGACCTGATTGAACCCACTCTGCTAGATGAGCTCATCTGCCACATTGGCACCCTGGCCTCTGTTTACCACAAGCCTCCCAGTGCTTTTGTGGAGGGCAGCCGTGGGGTGCAGCATAAGCGCCTACCACCCAGGAATGGATCGAATGAGAGTACCGAGAGCCCGGAGGCAGCCCCAGCAGGGGGACAGACCTCTGAGCCATCTCCGGCTGTCATCCCCTCCCAGGGAGACCTGCTGGGAGACCTGCTTAATCTGGACTTGGGCCCACCTACCAGCGGCGGCACCCCTGCCCCTACGTCGGCCATGCAGATGGGTGCCATGGACCTGCTGGGTGGTGGGCTGGACAGCCTGGTACCTCCCACTGctaattttagattttgttgCCAAAGCTCTTTATGGGGGATGACACAGAAGCGGTAA

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006897 endocytosis biological_process
GO:0035315 hair cell differentiation biological_process
GO:0048839 inner ear development biological_process
GO:0050974 detection of mechanical stimulus involved in sensory perception biological_process
GO:0048884 neuromast development biological_process
GO:2000649 regulation of sodium ion transmembrane transporter activity biological_process
GO:0030131 clathrin adaptor complex cellular_component
GO:0008565 obsolete protein transporter activity molecular_function

KEGG:

id description
K12392 AP1B1; AP-1 complex subunit beta-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150103 lncRNA downstream 231347 26501001 ~ 26501920 (-) True G119774
TU150098 lncRNA downstream 272107 26460618 ~ 26461160 (-) True G119770
TU150088 lncRNA downstream 275442 26457381 ~ 26457825 (-) False AMCG00018929
TU150034 lncRNA downstream 390189 26319977 ~ 26343078 (-) True G119713
TU150009 lncRNA downstream 582196 26119422 ~ 26151071 (-) True G119691
TU150156 lncRNA upstream 6346 26777635 ~ 26779240 (-) False AMCG00018930
TU150157 lncRNA upstream 6346 26777635 ~ 26778640 (-) False AMCG00018930
TU150161 lncRNA upstream 39595 26810884 ~ 26812556 (-) True G119825
TU150162 lncRNA upstream 41825 26813114 ~ 26813426 (-) True G119826
TU150235 lncRNA upstream 451217 27222506 ~ 27278009 (-) True G119891
AMCG00018928 mRNA downstream 107719 26623824 ~ 26625548 (-) True AMCG00018928
AMCG00018929 mRNA downstream 247952 26451724 ~ 26485315 (-) True AMCG00018929
AMCG00018926 mRNA downstream 322482 26367350 ~ 26410785 (-) True AMCG00018926
AMCG00018925 mRNA downstream 376659 26344630 ~ 26356608 (-) True AMCG00018925
AMCG00018920 mRNA downstream 1132604 25596536 ~ 25600663 (-) True AMCG00018920
AMCG00018930 mRNA upstream 6450 26777739 ~ 26797720 (-) True AMCG00018930
AMCG00018933 mRNA upstream 53973 26825262 ~ 26825957 (-) True AMCG00018933
AMCG00018932 mRNA upstream 73481 26844770 ~ 26869193 (-) True AMCG00018932
AMCG00018938 mRNA upstream 101605 26872894 ~ 26943014 (-) True AMCG00018938
AMCG00018937 mRNA upstream 171775 26943064 ~ 27063981 (-) True AMCG00018937
TU149840 other downstream 1545859 25186207 ~ 25187408 (-) True G119545
TU149831 other downstream 1561623 25134771 ~ 25171644 (-) True G119538
TU149755 other downstream 1655687 25075398 ~ 25077580 (-) False AMCG00018898
TU149337 other downstream 3926929 22804345 ~ 22806338 (-) True G119144
TU149076 other downstream 4619572 22080464 ~ 22113695 (-) True G118936
TU150163 other upstream 42191 26813480 ~ 26814073 (-) True G119827
TU150237 other upstream 459584 27230873 ~ 27242574 (-) True G119893

Expression Profile