RNA id: AMCG00018943


Basic Information

Item Value
RNA id AMCG00018943
length 2238
RNA type mRNA
GC content 0.38
exon number 5
gene id AMCG00018943
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 27475501 ~ 27482021 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGGCATATTAACAGACTCCTTTTAGACAGGGGTCCTTCCGCGTGGCTGACGTCAAAATTTACCGAGATATTTCACACAACAGGACTGCTTAAGTGGAAGCAAAGCTTGCAACAAACATTAATAAGCAAACGTATCATAATATGtactaaaaacattaatttatctaTGTTTATTGCTGGGTTGGCTTTACAATTGCACTGAATTTAATCATATATCTTCTATATAAAACGGAGACCGTCTGAGGCACTTTCTACCCATACCATTGTCGGAACTAAAGTTAATATTTACAATACGATAAAGTTAGCAGGAAAGCCACTGCTACGGGCAAACCACAGTCCTGCAATTAAACTGTTTGCCGCATTTCCATTATCTTTCatacattgcttttatttagcaAAATGATGTCCCTCTTTTCTGGGACCCGTGGAGTTTATAACTCTGACTTGGTTCTGTAAAGTCGATGAGTTTAAATGAAGAGCTCTGTCTGAGTATGGAGAGCTACCCTGCTTTGTACGAAAACCAGTCTGACTCCACGAAACAACAGGAAAGACATTACTACCTGCTGTCTGAACTGCAGAACCTCGTTAAGGACTTACCCAGTTCATTCCAGCAGCGTCTTTCCTATACCACACTCAGTGACCTGGCACTCGCCCTGATAGATGGCACTGTGTTTGAGATAGTTCATGGGCTCTTGGAGATCCAGCACCTGACTGAGAGGAACTTGTACAACCAACGGCAGAAACTGCACAGTGAGCACAGAGGGCTCAAACAGGAGCTAGTCCGGAAGCATAAGGAGGCCCTTCAGTCCTGCAAATCGCATAATCTGGCTGTACTCAGAGGGAACCAGCAGGTGGAGATAGAGtCTTTGGAACAGCGTATAAAAGATGAGCAGAGAATGATGGATGAAAAAATTGTGGTGGAGATGGATCAGAAGGTGGTTGACCAGCAGACTACCCTGGAAAAGGCTGGTGTTCCTGGCTTCTACATCACCACTAACCCACAGGAGCTGACCTTACAGATGAACTTGCTTGAACTGATTCTCAAACTGCAACAGAAGGAGTCTCAGTCTGGAAGCCTGTTTTCTTAATAttctttggtttaaaaaaaaaattgcaatataAGTTTTGGAGTCTAAAGAGGACTGCCTGGGCTTACATGGACAATGACCTGTCTTTTCAGAATGGACATATTGCAAAGGGAGCTTGGAAGACTAAAGGGGAAGGCAATTAagacttttgctttttttactAAGTTGCAAACAAGTAAAACTGGTATTGAGGAAATGATTGGTTCAGAATCACTttgaacataattaaatatcCTAATTCTATGGAAAAATCAATTGGTCttcaaatttgaaaaagaaaggtGGTCTGGGAAAACATTGGTCCAGAAGTGCAGTGAAACCTACATTTCTTCTAGTTTGGCTTCCTAATTGGCAAAGATTATAATCCCTTTAGCATGATAGTCTATAGATATTGGAATTTGTAAAGTTCTTGGTAATTTTTTATTCTTAGTTTGATGTAATGAAAAGTAACTGGACTGGAATTGGAATGGTAACTCAAGCAACCTGCTGTCAATGGGTattgtttagattttaaattaatttaccaTGTCTATTAAAGGgtattttctaaatatgttGTTCTGAAATTATAACTGGCCATGATTTGactaaactgtttatttgtattacagaaATATGTAGAATTATTCTTGTAAATAGTTTGAAAGCAAAGTTTTGTTTACTTCCAAGATCCTGTGACAGCAAACTATAACAGTCAGCAGAATGTGATTTGAAGATTATTTTTGCATCTTTTTGACTCAATATGAAAAatgctatatatttatacaatatctTATCCTATCTTTATTTACAGAACAATTGTAGAAACACCTAAGCCTTATGTAACAGTCTCAACCTACATACTCCTATTTCCTTTGTAAGATCTTCCTGTCATGTGCTGCTCAATATAGATTTGCATGCTTCTGCCATGAGTTAAGTAATGGAAGGCAATAAGTCAGTTCATGTGACCCTAGGTTGACGACGACTTTGATCAATAGCTTGTATGCCTTTAACTCTGCTTGTTAATGGGATGTCTTGCATAAGTGTTGTAAtaactttttattgttattatttaagcatttgttaCCGTTTTCCAATGTACCCTGTATTACAATGGGATTCATATGAGGTTTTCTGTATtggcatgcaaaacaaaaaacatacaaaagcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150242 lncRNA upstream 193929 27281006 ~ 27281572 (+) True G119897
TU150172 lncRNA upstream 620059 26849626 ~ 26855442 (+) True G119836
TU150170 lncRNA upstream 626003 26844689 ~ 26849498 (+) True G119834
TU150155 lncRNA upstream 648909 26825215 ~ 26826592 (+) True G119820
TU150151 lncRNA upstream 696841 26777653 ~ 26778660 (+) True G119817
TU150286 lncRNA downstream 32298 27514319 ~ 27515546 (+) True G119941
TU150285 lncRNA downstream 36243 27518264 ~ 27519750 (+) True G119940
TU150317 lncRNA downstream 188612 27670633 ~ 27670834 (+) True G119963
TU150408 lncRNA downstream 432821 27914842 ~ 27915123 (+) True G120029
TU150419 lncRNA downstream 467376 27949397 ~ 27951723 (+) True G120039
AMCG00018941 mRNA upstream 202238 27259930 ~ 27273263 (+) True AMCG00018941
AMCG00018942 mRNA upstream 272851 27201952 ~ 27202650 (+) True AMCG00018942
AMCG00018939 mRNA upstream 400068 27073796 ~ 27075433 (+) True AMCG00018939
AMCG00018935 mRNA upstream 426299 27048846 ~ 27049202 (+) True AMCG00018935
AMCG00018936 mRNA upstream 426794 27047766 ~ 27048707 (+) True AMCG00018936
AMCG00018944 mRNA downstream 18339 27500360 ~ 27513931 (+) True AMCG00018944
AMCG00018945 mRNA downstream 86419 27568440 ~ 27580251 (+) True AMCG00018945
AMCG00018949 mRNA downstream 143816 27625837 ~ 27662982 (+) True AMCG00018949
AMCG00018950 mRNA downstream 259006 27741027 ~ 27742100 (+) True AMCG00018950
AMCG00018951 mRNA downstream 299606 27781627 ~ 27791861 (+) True AMCG00018951
TU150090 other upstream 1014274 26460620 ~ 26461227 (+) True G119762
TU149874 other upstream 1990055 25484297 ~ 25485446 (+) False AMCG00018913
TU149795 other upstream 2207720 25234082 ~ 25267781 (+) True G119507
TU148883 other upstream 6286255 21187956 ~ 21189246 (+) True G118815
TU148789 other upstream 6719281 20755629 ~ 20756220 (+) False AMCG00018802

Expression Profile