RNA id: AMCG00018947


Basic Information

Item Value
RNA id AMCG00018947
length 2196
RNA type mRNA
GC content 0.55
exon number 16
gene id AMCG00018947
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 27299590 ~ 27371370 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCCCTTGTGAATTCAACCTTTTTGAAGATGACTGTGGAGGACACTACCCCCCTGACCATGCTGGAGGAGGTGACCACATTGGAAAGCCGTCAGGATGTTGCCATGACGCTAGTGAAGATCCACCTGGGTCAGGGGCTGGTAATCCCCTTCCTGGACTACCTGAACACTCGGGAGGTCAACCAGACCTGGGAGCTGGACCATTGGTGTCCCTCCAGTGTTCCAGAGAAGTTGACAGTGCCCAATGACAGCGACCTCAGGTCGACCAAGATGGAAGACGATGCCACCGATGTGGGACACCTTGCTTGGCAGTGCTTGGTACCAGATGAACCAATGCCAAGTGACCCAGGCCTCTCCACCAGGGGCTTCAGGAAAATTAAGGTGACAGGTGGGCATCACCCTGTGGCACCCCCGCCCACTTGCAGGATAAAAGTCGGGTCCACTGAGGTTCAGGGTCTTCTGGATTCAAGTAGTGCTGTCACAGTAGTACACCCTTCACTGGTGCGGACCTCCCAAATACAAAATCGTCCAATGATGACCCTGGCCTGTATCCACGGAGATCGGCAATCTCCAACAGCCTTAAGATGCAAGATGCTGGCTGCCCATGTGTTCCATAGTCAGGCAAGCCAGCCCTCTGCTGAGGACCCTGCCAACCCCTCCGAGGATGGAAAGCACAGCAATGATGAAGCGGATCCTAACACACTTTTCCGGTCCAATTCCCTGGCATCCAAGGCCATGGAGCAGTTTATGAAGgCTGTGGGAATGCTCTACCTGCATGAGGTCTTGAAGCCTATTGTGAACCACATCTTTGAAGAGAAGAAATACATTGAACTGGACCCATGCAAAATAGAACTGAATCGATCCAGACGTATCTCCTTCAAGGGCTCAGTGTCTGAAGCCGAGGTGAGGGAGAGCAGCTTGGAACTTCTGCAGGCATACCTCTCTGACATCATGGAGTCCATTGTGGGCTCGGTGGCCCAATGTCCCCCTGTCATGAGAGTGGCCTTCAAACAGCTGCACAAGAGGGTGGAGGAGCAGTTCCCAGAGCCGGAGAATGAGCCAGAGAGGGAAATGCCACTGACGTCCTCTGGGCTGGAAGAGGATGAGCCACTGATGTCCTCTGGGCCAAAAGAAGAGGAGCCTCTGATGTCCTTGGAGGCCGAGAAGGAGGAGCTGCTGCCATCCTTGGAGCCAGAGGAGAAGGAGCCAGTGACATCCTGGGGGATATTTGGCTGTGGCATGGCCATCCTCCAGCACCCTGGGGATGTGAAGTATCTTGCCATCAGTGGGTTCTTCTTCCTGCGTTTCTTCGCTCCTGCCATCTTGACTCCCAAACTCTTCAACCTTAGGGACCACCACGCAGACACACGCACCAGCCGCACTCTTTTGCTTCTGGCCAAGGCAGTGCAGAGTGTGGGCAACCTGGGCCTGCAGTTGGGCCATGGGAAGGAGCAGTGGATGGCCCCCCTGCACCCCTTCATCCTGCAATTGTCAGAGGTGCACCAGCGTGCCGTGTTCCTGCCCTCCGTGACAGTGAAGGAGGGCTACCTTTACAAGCGCAAGGTGGAGGGGCCCCAGCTGCTGACCCGCTTCGCCCTCAAGAAACGCTACTTCTGGCTGAGCAGTGAGACCCTTTCCTACGCCAAGACTCCTGACTGGCAGGTCCGCTCCTCCATCCCTGTGCAGCGTATCTGTGCTGTGGAGCGTGTGGATGAAAATGCCTTTCAGCAACAGAACATGATGCAGGTCATCACTCAGGACAATGATGGACAACTCCATACTATGTACATCCAGTGTAAGAACGTCAATGAGCTGAACCAGTGGCTGTCAGCCATCAGAAAGGCAATCCTAGGTTGTAGTCGAACCCACTCTGCTGTGACACTAGGTGACTGGAGTGACCCGCTGGACCCTGATGCAGAGACACAGACCATCTATAAACAGCTGTTGCAGGGCAGAGACAAGCTCAGGAAGAAGTACCTGGAATCTGTGGATGCTGAAACAGCCATTGATGAGGAGCAACGCAAACACAGCCCCCACACACCTCCAGatggtGTTGAGCGCAGTCGTATTTCCCTGGAGCGGCGGATGGCAGCGGCAGCACGACTGCTGGACGTGGTGCAGGACCTGGAGCGTGCTCACCAGGCCTTCGAGCGGCGTGAGAAGGAGGAGGCGGCCAATGAGATCCTTCCTCCCTAA

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0043085 positive regulation of catalytic activity biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150235 lncRNA downstream 21581 27222506 ~ 27278009 (-) True G119891
TU150162 lncRNA downstream 486164 26813114 ~ 26813426 (-) True G119826
TU150161 lncRNA downstream 487034 26810884 ~ 26812556 (-) True G119825
TU150156 lncRNA downstream 520350 26777635 ~ 26779240 (-) False AMCG00018930
TU150157 lncRNA downstream 520950 26777635 ~ 26778640 (-) False AMCG00018930
TU150274 lncRNA upstream 94017 27465387 ~ 27468649 (-) True G119929
TU150289 lncRNA upstream 135138 27506508 ~ 27507199 (-) True G119944
TU150290 lncRNA upstream 147242 27518612 ~ 27519715 (-) True G119945
TU150307 lncRNA upstream 199884 27571254 ~ 27572829 (-) True G119956
TU150338 lncRNA upstream 302476 27673846 ~ 27674566 (-) True G119981
AMCG00018940 mRNA downstream 74644 27217162 ~ 27224946 (-) True AMCG00018940
AMCG00018937 mRNA downstream 235609 26943064 ~ 27063981 (-) True AMCG00018937
AMCG00018938 mRNA downstream 356576 26872894 ~ 26943014 (-) True AMCG00018938
AMCG00018932 mRNA downstream 430397 26844770 ~ 26869193 (-) True AMCG00018932
AMCG00018933 mRNA downstream 473633 26825262 ~ 26825957 (-) True AMCG00018933
AMCG00018948 mRNA upstream 10633 27382003 ~ 27396226 (-) True AMCG00018948
AMCG00018946 mRNA upstream 182056 27553426 ~ 27567410 (-) True AMCG00018946
AMCG00018953 mRNA upstream 436772 27808142 ~ 27841558 (-) True AMCG00018953
AMCG00018952 mRNA upstream 491415 27862785 ~ 27878157 (-) True AMCG00018952
AMCG00018955 mRNA upstream 578342 27949712 ~ 27963857 (-) True AMCG00018955
TU150237 other downstream 57016 27230873 ~ 27242574 (-) True G119893
TU150163 other downstream 485517 26813480 ~ 26814073 (-) True G119827
TU149840 other downstream 2112182 25186207 ~ 25187408 (-) True G119545
TU149831 other downstream 2127946 25134771 ~ 25171644 (-) True G119538
TU149755 other downstream 2222010 25075398 ~ 25077580 (-) False AMCG00018898

Expression Profile