RNA id: AMCG00018948


Basic Information

Item Value
RNA id AMCG00018948
length 435
RNA type mRNA
GC content 0.56
exon number 4
gene id AMCG00018948
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 27382003 ~ 27396226 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAATCTGACACAGGTGGACCCAGATGAAGAGGTACAGGGAGAGATTCACCTTGgcctggagctgctgcaggacaCCCCCAGGACAAGTCTGCGGTGCCACGTCATTGAGGCCAGAGACCTGGCTCCTCGAGATATCTCAGGCACCTCGGACCCCTTTGCTCGAATCCTGTTCAACAACCGGAGTGCTGAGACCTCGATCATCAAAAAGACACGCTTTCCCCACTGGGATGAGCTGCTGGAGCTGCAACTGCAGACAGAGGAGATGTCAGAGCAGGCCTGCATCACTCTGGAGGTGTGGGACTGGGATATGGTGGGGAAGAACGATTTCTTAGGGAAGGTGGAGATCCCTCTGGCTTTCTTGTACAAGACACCCCTTTTGCAGGGCTGGTTCCGGCTGCTGCCTCTGGGAAACACTGAGGATGATGCAGGGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150257 lncRNA downstream 25971 27355825 ~ 27356032 (-) True G119912
TU150235 lncRNA downstream 103994 27222506 ~ 27278009 (-) True G119891
TU150162 lncRNA downstream 568577 26813114 ~ 26813426 (-) True G119826
TU150161 lncRNA downstream 569447 26810884 ~ 26812556 (-) True G119825
TU150156 lncRNA downstream 602763 26777635 ~ 26779240 (-) False AMCG00018930
TU150274 lncRNA upstream 69161 27465387 ~ 27468649 (-) True G119929
TU150289 lncRNA upstream 110282 27506508 ~ 27507199 (-) True G119944
TU150290 lncRNA upstream 122386 27518612 ~ 27519715 (-) True G119945
TU150307 lncRNA upstream 175028 27571254 ~ 27572829 (-) True G119956
TU150338 lncRNA upstream 277620 27673846 ~ 27674566 (-) True G119981
AMCG00018947 mRNA downstream 10633 27299590 ~ 27371370 (-) True AMCG00018947
AMCG00018940 mRNA downstream 157057 27217162 ~ 27224946 (-) True AMCG00018940
AMCG00018937 mRNA downstream 318022 26943064 ~ 27063981 (-) True AMCG00018937
AMCG00018938 mRNA downstream 438989 26872894 ~ 26943014 (-) True AMCG00018938
AMCG00018932 mRNA downstream 512810 26844770 ~ 26869193 (-) True AMCG00018932
AMCG00018946 mRNA upstream 157200 27553426 ~ 27567410 (-) True AMCG00018946
AMCG00018953 mRNA upstream 411916 27808142 ~ 27841558 (-) True AMCG00018953
AMCG00018952 mRNA upstream 466559 27862785 ~ 27878157 (-) True AMCG00018952
AMCG00018955 mRNA upstream 553486 27949712 ~ 27963857 (-) True AMCG00018955
AMCG00018954 mRNA upstream 578766 27974992 ~ 27984938 (-) True AMCG00018954
TU150237 other downstream 139429 27230873 ~ 27242574 (-) True G119893
TU150163 other downstream 567930 26813480 ~ 26814073 (-) True G119827
TU149840 other downstream 2194595 25186207 ~ 25187408 (-) True G119545
TU149831 other downstream 2210359 25134771 ~ 25171644 (-) True G119538
TU149755 other downstream 2304423 25075398 ~ 25077580 (-) False AMCG00018898

Expression Profile