RNA id: AMCG00018955


Basic Information

Item Value
RNA id AMCG00018955
length 3194
RNA type mRNA
GC content 0.48
exon number 13
gene id AMCG00018955
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 27949712 ~ 27963857 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCGTTTTAAgtcctgtttgtttattatggTTTTGTCATATGACCAGCAGTGGGTCAAAGATGGCCTTCGCTTGCATGACCGGTAGGTCGGTCAATTCGGGCGCTATGTCGGTTTGTGGAGCAGTGTTCGTGTGCTTGCTGACCGGCTCGCTGCTGCCGGCTGTGCAGACAGAGATTCAGTCGGCGCTGCTAGACGGGGAGACGGGAAAGCTGACGCTCAGCCCGGGCTTGCATCCTGACTTTGTGGCGTGGGCGAATTTCACCGACGACATTAAGCTGACGGGGTGGTCATATCTTGAAGTTACCACAAGTGGGAGGTACAATGACACCCTCCAGGCTTATGCGGCGGGGGCGGTGGAGGCGGCTGTCACCTCCCAGCTGCTCTACAAGCATTGGATGAACACCATGGTGGGCTACTGTGGCCCCTTCAGATATGAGAGTGGTTACTGCCAGAGGCTAAAGCATTACATAATTCACAATCTGCAGTGGATGCAGCAGCAGATGGAGAAGGGTGAGGACCTGGAGTATTGGCATCAGaTTCGATTGGCATTGCTGCAGCTGAGAGGTCTGCAAGACAGCTATGACGAGCAGCTCGGCTTCCCCAGCGGCCCCTTTTCAGTTGACCCCTTTGGTTTCCTGCTCTTTCAGATGGGCGGAGACCTGGAAGACTTGGAATTGGCACTCAACAAAACCGCTCAATCACGAACCCTGGGCTCTGGCTCTTGCTCTGCCCTTATCAAGCTGCTGCCTGGCAACAAAGAGCTGCTAGTCTCCCATGACACCTGGAACAACTACCAGTCCATGCTGAGGATCATGAAGAAATACTCCTTTGCCTTCAGGACCTCCTCCCAAGGGGGCACTCCAATTCCAGGAGGGATCCAAGCCTTCTCCTCCTACCCGGGCTCTATATTCTCTGGAGATGACTTTTATATTCTCGGCAGTGGATTGGTTACCCTGGAGACGACCATTGGGAACAACAACCCTGCCCTGTGGAAGTTTGTGACCCCTGAAGGCACGGTGATGGAGTGGCTGCGGAACATCGTGGCCAATCGGCTGGCCCAAAACGGCAAGCAGTGGGCAGCTGTCTTCCGCAAGTTCAACAGTGGCACGTACAATAACCAGTGGATGATTGTAGATTACAAGGTCTTCACCCCTGGAGCAACTGACACCCAGGAGGGGCTCTTCACAGTGCTGGAGCAGATTCCAGGTCTGGTTGTGTCGGAAGACAAAACCAAGGAATTGCTGCAGAAGGGTTACTGGGCAAGTTACAACATTCCCTACTTTGAGCAGGTGTTCAACATCAGTGGCTGCCCTGCTCTGGTGCAGAAGTACGGAGACTGGTTCTCATTCGACATGAACCCACGGGCACAGATCTTCCGCCGCAACCACAGTCTGGTGGTGGACTTAGACTCCATGGTGCGGCTCATGAGGTATAATAATTTCAAGGAGGACCCTCTGTCGCAGTGCCAGGGCTGCGACCCTCTCAATAACGGAGAGAACGCCATCTCTGCCCGCTCCGATCTCAACCCAGCCAACGGCACGTACCCCTTCGGGGCCCTGACACAGAGATCACATGGTGGCACTGATATGAAGGTGACCTCCTTCGCCATGTTCAGTGACTACCAGCTCCTGGCAGCCAGCGGGCCCACCTGGGATCAGTTACCTGCCTTCCAGTGGAGCAAATCCCCCTTCAGTGGGCTGCTGCACATGGGCCACCCTGACCTCTGGGACTTCCCTGTGGTGCCAGTGCACTGGGCGTGACACCGCTCTGTCCCCAGCTAGATGgaccacctctccctctcttggcTGCAGAGGACCAATGACTTTTAAAAAGGGATTCTCTAGATTAGGGCAGCAGGGAGGAGATTTAAATTCTTAAAAGCTAAAATGTCAGGGATCTCAGTCTCATGTGTTCTACAAGTACCTCTGAGAAGCAATTTCTCTTGTGACATCACATCACAATTGTGGAAGTGTACCTTATTGACCCATTTTCAAGAGGTAATGACCAgtttgaaaaacatacaatgaacatttttatatgaatttCTAAATCGACAGTCCCTTGCTGTGTCCCAACTTACTAACAATTTAACACGCACAGTGGCGTTGAGTTTTGTTGCAAGCTAACAGAActgaatgaatatataaacaaatatatgcatgcattcatACAGATTCAAATCATTTGCAGTGATTTTTAAGATGCAGCCCTTGATTTAGTTTTGAAGAGCTGAATGAAATGCACTGTGTCTAGTCAAAGATATGTACACTATCGGGAACATACAGAATGTAGCACTGTGTCCAATGTCTTCCTTTTAAGGCAATTTGCTGTTGGGTTGCCTCATGTCTCCTGCTTCCTGTACTAAACCTGTACCACGAAAAGGCCTGTTCCCATCCGTCACTGTGAGTGAGCTTGGCAAGTTGCTTGTAACTTAATATGTAACCATAGCTGCTGTGCTAATAAGCTGACAGTGTCTGCTATGCTGCTTTGTGGGTAGGGAGGTTTAATGCTAGGGAACATTTCCAGAATGCGTTTGTAAATGGTTCAGTAATATAAACTAAATGCAATTTTTTCTTGGCATCCATGTTACGTGGAAGTTATTTGCATTCTTAGTTCACTCAGATGTATTTAAAGTACGATATATTGCCTGTGTTTGGGGCCATGGTGAACACATTCCTGGTGGAATCCTTTGGGTGTACTGAACTGAAAGATCAACGAACCAAGACTGCATTTCGTTAAGGGGGCTTTTAGTTTTGAGGTGTTGATATACACATTTCCTTTCCAGCTATATTGCTAGTAAAGTGATCCATACTTTGTGTTTAACTTGCTAATAAAAATAGTGGATTTGCTGGGATGTactgttatttgttttccattggcTATTTATGGGTGTAAAAGCTGGTTAATGTTCCCATTTGTTGCATAATaccttatttttgtattctcttAAAAGGTCAATAGACAACTGCAGTACTGTGTAAGAAGTGGGGCTGGATACTTTGTAGAATAACTTGAAATTCAGAATCTTCTATGAGTTTGTCGATCTAACAAACCACCAAAATGGTTGCATTGCCTCTTGAAGGACACACAGTTCATCTGAGCTTTAGCAGGAATTGATAGTGGTCCAAACTGATGTATTGTGTACATGAATCATTCTTGCAATTGACTGAATTAAACTTTTATACATGGTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150410 lncRNA downstream 16539 27931667 ~ 27933173 (-) True G120031
TU150405 lncRNA downstream 50156 27899322 ~ 27899556 (-) True G120026
TU150352 lncRNA downstream 179913 27769555 ~ 27769799 (-) True G119995
TU150345 lncRNA downstream 206677 27740932 ~ 27743035 (-) True G119988
TU150343 lncRNA downstream 216339 27733063 ~ 27733373 (-) True G119986
TU150549 lncRNA upstream 390243 28354100 ~ 28354838 (-) True G120145
TU150564 lncRNA upstream 441156 28405013 ~ 28405304 (-) True G120160
AMCG00018952 mRNA downstream 71555 27862785 ~ 27878157 (-) True AMCG00018952
AMCG00018953 mRNA downstream 108154 27808142 ~ 27841558 (-) True AMCG00018953
AMCG00018946 mRNA downstream 382302 27553426 ~ 27567410 (-) True AMCG00018946
AMCG00018948 mRNA downstream 553486 27382003 ~ 27396226 (-) True AMCG00018948
AMCG00018947 mRNA downstream 578342 27299590 ~ 27371370 (-) True AMCG00018947
AMCG00018954 mRNA upstream 11135 27974992 ~ 27984938 (-) True AMCG00018954
AMCG00018956 mRNA upstream 34298 27998155 ~ 28007014 (-) True AMCG00018956
AMCG00018961 mRNA upstream 175699 28139556 ~ 28154700 (-) True AMCG00018961
AMCG00018959 mRNA upstream 212962 28176819 ~ 28189538 (-) True AMCG00018959
AMCG00018962 mRNA upstream 227861 28191718 ~ 28203341 (-) True AMCG00018962
TU150237 other downstream 707138 27230873 ~ 27242574 (-) True G119893
TU150163 other downstream 1135639 26813480 ~ 26814073 (-) True G119827
TU149840 other downstream 2762304 25186207 ~ 25187408 (-) True G119545
TU149831 other downstream 2778068 25134771 ~ 25171644 (-) True G119538
TU149755 other downstream 2872132 25075398 ~ 25077580 (-) False AMCG00018898

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00073734 True 2599 mRNA 0.50 12 NC_007120.7 168442 ~ 180334 (-)