RNA id: AMCG00018958


Basic Information

Item Value
RNA id AMCG00018958
length 2354
RNA type mRNA
GC content 0.54
exon number 20
gene id AMCG00018958
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 28245468 ~ 28263767 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTCCATGGTATGTGcgtgtactgtatttgtttttaatttaatgaacgtaatggtctgtttttaaatattttttacaagcaaactttttttatttttattttttttttacaaagtttAAGCAGCTGTTCGACCCCAGGATTGATTGTAGGCACCCCCTTTCGCCTGTGCACACCATTAGCTGGGAATGTCATCCGACGCTCTGAAGAAACGGAAGCCCAAAGTAATCCGCAATGAGGGCAGCACCCCCGAAAGTAAACGCAATAGAGTGGAGGGAGACCAGGAGGTGAGGGTGTACAGTGAGGAGGTGGAGCTGGAGAGCAGGGACCCCAACCAGGATTATGCTCTGTACAAGCAGACCTGTGAGGACCTGGCCAAACTGATGGCAGAAATTCATGAGTTGAAGACCAGCGGTGGCAAGGACAGCGCGACAGAGATAGAAGAGAAGCGTTTGATGGGCTGCATCCACTTCATGACTCTGAAGAAGCTCAACCGTCTAGCTCACATGAGGCTGAAGAAAGGCAGGGATCAGACCCATGAGGCAAAGCAGAAAGTGGATGCGCTTCACCTACAGCTACAGAACCTGCTGTATGAGGTGATGCACCTGCAGAAGGAGATCAGCAAGTGCCTGGAGTTcaaGTCCAAGCATGAGGAGATCGAGCTTGTCAGCGTGGATGAGTTCTACCAGGAAGCCCCCACGGAGATCTCCCGCCCCCCTCTCACCAAGGATGACCCCCACCAACTCACGCTGGCTCGTCTGGACTGGGAGCTGGAACAACGGAAGAGGCTGGCAGAGAAGTACAAGGACTCCCTGGCCAGCAAGGAGAAAATCCTGAAGAGCATCGAGATCAAGAAGGAGTACCTGAGTAGCCTACAACCTGGGCTCAACGCCATCATGCAGGCCTCTCTGCCAGTCCAGGAGTACTTGTCCATGCCTTTTGAGCAAACACAGAAGCAGAACGAGGTGGCGCGccacctgcccccccccctctaCGTCCTGCTGGTGCAGGTCGATGCGTACGGACAGGCTTGTGaCAAGAGTCTATCTGTGTCCATCAGTGGAGATGTGGATGAGGCCAAGGCCCTTGCTAAGCCACCAGAGGATTCCCAAGATGATGAGAGTGACTCAGATGCTGAGGAGGAACAAAACACGAAGCGTCGGCGGCCCACCCTGGGTGGTCAATTGGACGACAAACGGCGGGAGATGCTGAAGCGCCaccccctgtctgtctgtgtcgaCCTCAAGTGTAAAGATGGCAGTGTGCTGCACCTCTTCTTCTACTACCTGATGAACCTGAACATTATGACTGTGAAGGCAAAGGTGTCAACGGGCACAGAGTTGCCCGGGGCCGTCAGTGCAGGGGAACTGCTGAACCCTGAGACCCTGCTGAACTGTCTGTACACCAAGGATCTTGGCACAGAGACACCTAATCCTGCCAACCGCTACCAGTTTGATAAAGTGGGGATTGTGACCTTCGGCGACTATGTGACGGAGCTGGGACACCCCTATATCTGGGTGCAGAATCTGGGGGGGTTGCAGTTTCCTACTGACAGACCTGAGGGAACCTCCAGGGGGAGCTCTCTCAGCGCCAGTCACATGGAGACGACCATGAAGCTGTTAAGAAACCGCCTGCAGTCTCGTCTGGCCCTACATAAGCAGTTTGCTTCCTTGGTGTCCAATGAATGTCAGCACCTCTTCCCAGCCAAGGTGGTCTCTCGACTGGCCAAGTGGACTACCATGACCTACCAGGAGTATGTGGAGCTGCCCTTCACTCAGCCTGTGGTGAACACAGGCCTGGCCCAGGAGAGTGACCTCTACTTCATGGCACTCATCGAGAGGGGCACAGCCCGGCTGCAGGCCTCCATTGTCCTGAACCCTCGCTATGCAGAAGTACCACCCCTCTTCTCCCTGTCTCTCAGCTGGAAGGGGGAGCGCAGCGGGCGGACAGACGACAACCTGAGGGCCATGGAGAGTGAGGTCAACGTCTTCAAGTCTGAGCTGCAGGGGCCCCACCCAGGCTACCAGCTTCTGACCAATCAGCTGCAGCGACTTTGCCTTTGTCTGGACGTCTACCTGGAGACCGAGAGCCAGGACGACAGTGTGGAGGGGCCACTCGAGTTCCCCCGTGAGAAGATGTGTCTGCGCACAGTGCGgggTCCGAACCGCCTGAAGCCCTTCAAATATAACCACCCTCAAGGCTTCTTCAGTCACCGCTGAGCCCACCTCTGTCGAGCCCTGTGGGTCAGGACTACACCCTGCTCCATCTCCATCACTGTAAATCTCTGCTACTGTGGAGCTTTTATATGGATTCCTTCTCTTCCTAGATTGaacaattaaactattttgtcCCTCTCAA

Function

GO: NA

KEGG:

id description
K13174 THOC5; THO complex subunit 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150410 lncRNA downstream 312295 27931667 ~ 27933173 (-) True G120031
TU150405 lncRNA downstream 345912 27899322 ~ 27899556 (-) True G120026
TU150352 lncRNA downstream 475669 27769555 ~ 27769799 (-) True G119995
TU150345 lncRNA downstream 502433 27740932 ~ 27743035 (-) True G119988
TU150343 lncRNA downstream 512095 27733063 ~ 27733373 (-) True G119986
TU150549 lncRNA upstream 90333 28354100 ~ 28354838 (-) True G120145
TU150564 lncRNA upstream 141246 28405013 ~ 28405304 (-) True G120160
AMCG00018960 mRNA downstream 23417 28203706 ~ 28222051 (-) True AMCG00018960
AMCG00018962 mRNA downstream 42127 28191718 ~ 28203341 (-) True AMCG00018962
AMCG00018959 mRNA downstream 55930 28176819 ~ 28189538 (-) True AMCG00018959
AMCG00018961 mRNA downstream 90768 28139556 ~ 28154700 (-) True AMCG00018961
AMCG00018956 mRNA downstream 238454 27998155 ~ 28007014 (-) True AMCG00018956
AMCG00018966 mRNA upstream 39280 28303047 ~ 28339357 (-) True AMCG00018966
AMCG00018969 mRNA upstream 77999 28341766 ~ 28350528 (-) True AMCG00018969
AMCG00018968 mRNA upstream 86858 28350625 ~ 28351023 (-) True AMCG00018968
AMCG00018967 mRNA upstream 106595 28370362 ~ 28376458 (-) True AMCG00018967
TU150237 other downstream 1002894 27230873 ~ 27242574 (-) True G119893
TU150163 other downstream 1431395 26813480 ~ 26814073 (-) True G119827
TU149840 other downstream 3058060 25186207 ~ 25187408 (-) True G119545
TU149831 other downstream 3073824 25134771 ~ 25171644 (-) True G119538
TU149755 other downstream 3167888 25075398 ~ 25077580 (-) False AMCG00018898

Expression Profile