RNA id: AMCG00018959


Basic Information

Item Value
RNA id AMCG00018959
length 2253
RNA type mRNA
GC content 0.57
exon number 19
gene id AMCG00018959
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 28176819 ~ 28189538 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGGAGGACCGGTTCCGCAGCCTGTTTGCCGACTTCGGCACGCTGACGGACTGTGGCCTCAAGTTCACCAAGGAGGGCAAGTTCCGCAAGTTTGGCTTTGTGGGCTTCAAGATGGAAGAGGAGGCGGACAGGGCGCTGAAACACTTTGACAAGAGCTTCCTGGACACCTCCAGAATCACAGTCGAGTGGTGTAAGTCGTTCGGAGACCCGAGCAAGGCCAGATCCTGGAGCAAGCACACCCGCAACTCTGCAGCCACGGACAAGCAGGAGCCAGAGGCACTGACGCCTGCGTCCGACCCCAATGAATCAAAGAAGCTGGAGGAGGACCAGGACTTCCAAGAGTTTCTGGCTGTCCATCAGAACCGCGCCCAGGTCCCCACCTGGGCCAACGACACCCTGGCAGAGCCCGCGGACCTGCGTGGTACagacaaggaaaaaaagaaagaacagggGACGAAGAAGAAGTTGGCCACTGACGACTACCTCAACTTCGATTCGGATGAGTCAGAGAgtcaggaggaggaggaggaggaggaggaaggagagaatGAGCAGGGCCAGAGCCCTGAAAGGGAAGCACTAAAGAGTGGCCTATCAGATATGGACTACCTGCGTTCCAAAGTGGTGCTGGAGCAGGCGGAGacacaggaggaggaggaagaaaaaaatgaaaaggagcaCAAGACAGAGAAGGGCCCTACACATGGCCCACACAGCGACAGCGCCTACGAGAGCGGAGACAAAGACACGGAGCCCAAGAACAAGGAGAAACATAGCAATGCCCCCAAAGTGCAAGAGACGGTACCCACTACAGAGTTCACTGTGAAGCTGCGAGGAGCCCCATTTGATGTGAAggagCAACAAGTACGCGAGTTCCTGGTTCCTCTGAAGCCATCCGAGGAGGAGGTGCAGAAGGCTTTGCACAGGAACAAAGATTACATTGgTGGGCGCTACATTGAGGTGTTCCGTGCCTCTCCCCCCCGGACAGGCCTGTCGCAGAGGAGGAAAGCTGAGGAGCGGAACTGGCGCAGGGAGCTgaaggaggatgaggaagaagaggaggtgTCGGAGTCGGGCAGGCTGTTCGTCAGGAATCTGCCCTATACCTGCACTGAGCAGGACCTGTCTGATCTCTTTGCAAAGCACGAGGTTCACTTCCCCATTGACAACCTGACCAAGAAGCCCAAGGGATTTGCCTTCGTTACCTACATGATGCCCGTGCACGCTggCCGCATGCTGCACATCCTGCCATCCacaataaagaaagagaaacccGAGGAAGGACCCAACGCTCCGGGTGCCTCCACTTACAAGAAGCAGAAAGACGCCAAGGACAAGGCGAGCAGTACCAGCTCCAATAACTGGAACAGCCTGTTTCTGGGGACCAGTGCTGTGGAGTCTCGGGGCAGTGTTGCTGTGCGTGTGGCCCTGGGAGAGACGCAGATAGTCCAGGAGACTCGACAGTTCCTGCTGGACAATGGAGTTAGCCTGGACTCCTTCAGCCAgGCCTCGGCACCCCGTAGTGGCTCCGTACTGCTGGTGAAGAACCTGCCAGCGGGGGTGCAGGCCACAGAGCTGGAGGCTGTCTTCTCCCCCCACGGCTCCCTGGGGAGGGTCCTGCTGCCCCCCTCCGGCCTCACCGCCATCGTGGAGTTCCTGGAGCCCACCGAGGCCAAGCGGGCGTTCACCAGACTGGCATACACCAAGTTTCAGCACGTGCCCCTCTACTTGGAGTGGGCTCCCATGGGCATATTCACAGCACCTCTGCCCGCCAAGAAAGAGGAGCCGCTGCAAAAGCCTGGATCAGTTACAGAGACGGAGACCAAGCCAGCACCTGAGGACGAGAGCAGTGAGGACAACGAAGAGGAGAGCATTCCGGGCACCACACTCTTCATCAAGAATCTCAACTTCAGCACCACTGAGGAGATGCTGCAAGATGTCTTCTCAAAGTGTGGCGCAGTGAAGAGCTGCACCATCTCCAAGAAGAAGGACAGAACAGgtaCTCTGCTGTCTATGGGATATGGCTTTGTGGAGTTCAGGACCCCCCAGTCAGCACAGAAGGCTCTCAAACAACTGCAGAACTGCACTGTGGATGATCACCAATTACAGCTGAAGATTTCAGAGCGAGCAACCAAGCCCAGTGTGGTGAGCTCACGCAAGAAGCAGACCACCAAGAAGCAGACCAGCTCCAAGATCCTGGTGCGCAACATCCCCTTCCAGGCCACAAACAGGGAACTGCGGGAGCTTTTC

Function

GO:

id name namespace
GO:0048546 digestive tract morphogenesis biological_process
GO:0003723 RNA binding molecular_function

KEGG:

id description
K14787 MRD1, RBM19; multiple RNA-binding domain-containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150410 lncRNA downstream 243646 27931667 ~ 27933173 (-) True G120031
TU150405 lncRNA downstream 277263 27899322 ~ 27899556 (-) True G120026
TU150352 lncRNA downstream 407020 27769555 ~ 27769799 (-) True G119995
TU150345 lncRNA downstream 433784 27740932 ~ 27743035 (-) True G119988
TU150343 lncRNA downstream 443446 27733063 ~ 27733373 (-) True G119986
TU150549 lncRNA upstream 164562 28354100 ~ 28354838 (-) True G120145
TU150564 lncRNA upstream 215475 28405013 ~ 28405304 (-) True G120160
AMCG00018961 mRNA downstream 22119 28139556 ~ 28154700 (-) True AMCG00018961
AMCG00018956 mRNA downstream 169805 27998155 ~ 28007014 (-) True AMCG00018956
AMCG00018954 mRNA downstream 191881 27974992 ~ 27984938 (-) True AMCG00018954
AMCG00018955 mRNA downstream 212962 27949712 ~ 27963857 (-) True AMCG00018955
AMCG00018952 mRNA downstream 298662 27862785 ~ 27878157 (-) True AMCG00018952
AMCG00018962 mRNA upstream 2180 28191718 ~ 28203341 (-) True AMCG00018962
AMCG00018960 mRNA upstream 14168 28203706 ~ 28222051 (-) True AMCG00018960
AMCG00018958 mRNA upstream 55930 28245468 ~ 28263767 (-) True AMCG00018958
AMCG00018966 mRNA upstream 113509 28303047 ~ 28339357 (-) True AMCG00018966
AMCG00018969 mRNA upstream 152228 28341766 ~ 28350528 (-) True AMCG00018969
TU150237 other downstream 934245 27230873 ~ 27242574 (-) True G119893
TU150163 other downstream 1362746 26813480 ~ 26814073 (-) True G119827
TU149840 other downstream 2989411 25186207 ~ 25187408 (-) True G119545
TU149831 other downstream 3005175 25134771 ~ 25171644 (-) True G119538
TU149755 other downstream 3099239 25075398 ~ 25077580 (-) False AMCG00018898

Expression Profile