RNA id: TU142757


Basic Information

Item Value
RNA id TU142757
length 3287
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G114018
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 468788 ~ 472124 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGGGAAGAAAAGAGCTACTTGGGTGATGGTCTTCAGTGAGTCATTCGAGCCACTGGAGCTGCCCAAGGTCAACGCGGAGGCCTTTGTGGTGGGACTGAGACCAGATATCATTCTTCCTTCAGGGTGTCCCTCCAGCACTCGCTCTTGGTAGCCTAGTCATGTGCACTGTCGGCCAAAAACTAGAAAAAGAAACCTTCTGAGCTGAAGGAGTTTAATTTATAGTGTGTTTCACAGATGCCTGTGAGGGTCACGGACTCTGCTGAACACATAGAGCGATACGCTGccgtttgttgttgtttttttttttttaaatctttcgCAACCCAGTGCCTTAAAGCGAATGCGCGGTGGGCCGCCCCAGCACTGAGGGTCCGACCAGAGCCCAGGACGGATGTTGTAATGATCAGTCTTAGTCACGGGTATGTTTAGCAAGAGGAGAGATTAAATGGATTTGACGAACTACCCTCCACTGGCCCCCTCAGTGGAAAACTATGTGGCTAAACACTGTTATTCTTTAATTCATATGGTTTTCTCATAGCATTTTGATTCAGATAGAGGGAacgaaagaagaaaaaaactaaaaaggaataaaaaactAGGGGCACAGGGGCAGTGTAGAtgagaatttgttttgttttgctttgtggctCCAgtgtctccctctgtccctgAGAGGAGATCGTAAAGGTGATCATCTGTTTAATCGGCAGCTGTGAAGTAACCAGGTCTTGTGCCGCCCGTCCCCAATAATTCACACAGACCTGTAGCTCCTCCTGCAGTGGGATGGGGCCATGGGCCGACTCCTGTAAGAGGAGATAATGAGAGGCATCGTGTTTGCACATGTTCCCCTCTCCATGAGTTTCCATGACCAGTGACCTTCTTCCACTGTATCAATCTTGAAAATCCTAAAACGTAATCTGGAGAGAACAAGAGATCCTGattgtgtgtgcctgtgtatatagtgtgtgtgtgtgtgccgagctctggactgtgtgtgtgagtcctTTTGTTATGAAGAAAACTTATCtgaaaaacacttatttagcaaaaaaaacttatttcttcaaattagtaaataaaataaaatcaacaaacgGTAAACTATTTTCTAactaaatggagaaaagtatatgtatattgtaaataaatgtatgccgTATCTTTTCTGATTGTCTTCCTTACTGGATATTGTTGTAACCCCGACCCAGCATATTTGTACTGCTACTTTAGTATTATTaccaaacaaaactgaaaaagaaaacctgtcTGTGTGAGGGATGCAGAGGTGGCCCAGATGTTTAGATATTCTGTTgggatttttatttgatttgtttggttgtttgcccatattgcattatattgacCAAGTCTGCTCTTACTATATGACcagtattgttaataataatgtcacTACGGTTATATTTATTGGTCGAGAGTTGAGACAGATCCTGGTGACGGACGGTGTGTCAGAGCGGCTCGATTGAGCTCCACTGATGGCAGCTGCCGAACAGTAGTTTTGCCTCCGTCTGTTCGTCAGTGTGATGAGAGCGAACGTGACCAGCCTGCCCTGCGTTCGGCCCTACCGCCCCCCTTGCTCTAATCTGTGTCTGAATGTCCCCGTCAGTCTGGCGAAGGAGAAAAGATACCGGCTCTCAAAATAGCTCTGGCCGAGTCCACTATCTCCTGCCTGTGGGGCCCTCTCTCCGAGTGTGACTGTTCTGCACTATTTTTATGATCGTCcttgttggggtgggggggcaggttTCTCTGGACAGGTAATTCCAGTGGTGTTGGAGTTCAGCCCAGTTTTTCTGGTTATTGTATGTTGTGGTGATGGGGTATCGCTCTAGTGGAGGGAGGAAGGGACAGGGCAAGGGAGACACCATCTTCCCAGAGGACGGCAGGACAATGCTGAGGGCCGAGGGGTCGACAGGGGCCCCACTTCCTCTGTGGACACTGCTCTAACCACACCGGGGGGACAGAAAACCATAATGGTCCCCCTCTCTGCATGTGCCTGAGTGCACAATTGTGGATGAGTTTAGTTCGTGCCGGTTTCCcttggcttttattttttctgcccCCCCGGTCTGGTTCTGTCATCTCAAGGCCCTCTGTCCCTCAGTGCAGTCTTTCAAAGTTAATACATTTCCCTCTGAAAGATCCCGTCTGAAATGGATTCCATCTGGACTAGCGGACGGGCCGCACACAGAGGCCGGTGCCTGTGAATTTACTTTCTGGTGTTTATCTGCAGCTTCAATCTCAGCCTGACTGCGGGGAGAGAGAGCCTCGTCATGTGGGGAGCGGGGCGTGAGACTCGCGGACCCAGAGCGGGCTTTTCCCATCGTGCCGGGgctgtggagggagggagagagcgagagagagcgagagagagcgagagagagaggggcagcaGCTGTGCGGAgtgcgaggaggaggaggaggaggaggagtcaGGCCTGAGGTTTATGGCAATTAGGGAAAAATAACAGGAATGTTGGCCGAGAggggttgtgttgttgttgagaTTCAGTCACAATGTGTAATAACCGACAGCACAGGGAAAGCCAGGGGGGCCGGCTGAGCCAAACCAGCACCGAACACGCGCTGACACTCCCTGCCACGGCTCGGCGGGGGGGTCGGTTtctcctgcagtgtgtgtgtgtgaacttgTAAATTTCAGCTctgctcccacacacacacactcgcacggCTCCAACTGCACTGAAATATCCTCACCGAGGTTTCAATCAGCagccaaacaaacaagcaaacaaaaagactaaaaataaagacacaaatcATGCTGAGAAGGTCTGTGAATGGCTGGGGGGGAAGttgtcattgtatttgtttagtttgtcaTCTGGGTGAGATGTTGGGTgggtatagagagagagacagaaagctGCTGCTCACTACGAATGTCTGACGTTCACTGTTGCTGCGCCCCCCCGAGCTCGGCCAGCCTGGCACTGAGTGCGTTGGGATTTCGTTGTTATTGTTGCCGTTTGTTTCTTTAGGGGTCATAAACTGCCTGGAGACGACGCAGCGATGCCTCAGATTGAGCTGCCGGTCCCTCTCGTGTtatcacccccccacacacacacacacactgtaccgCATCCAGGAACTGACAGCACCCCCACCCTCTGCCCCGCTGTGATTGTAAGAAAGGTATTCCTTGACtgtaaaaagtgtttaaatctGAAACTGATGAACTGTCTTGCAgttgttttgtatatatgagctgtataaatacattaaatgtactttatgtTGACTGGAT

Function

GO:

id name namespace
GO:0050780 dopamine receptor binding molecular_function
GO:0001664 G protein-coupled receptor binding molecular_function
GO:0031752 D5 dopamine receptor binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142803 lncRNA downstream 81086 553210 ~ 553504 (+) True G114056
TU143011 lncRNA downstream 690768 1162892 ~ 1178095 (+) True G114205
TU143047 lncRNA downstream 794716 1266840 ~ 1268893 (+) True G114237
TU143063 lncRNA downstream 818431 1290555 ~ 1291851 (+) True G114253
TU143096 lncRNA downstream 1061351 1533475 ~ 1534982 (+) True G114274
AMCG00018043 mRNA upstream 794 465505 ~ 467994 (+) True AMCG00018043
AMCG00018046 mRNA upstream 23738 440190 ~ 445050 (+) True AMCG00018046
AMCG00018045 mRNA upstream 38157 429053 ~ 430631 (+) True AMCG00018045
AMCG00018044 mRNA upstream 50108 391725 ~ 418680 (+) True AMCG00018044
AMCG00018038 mRNA upstream 439102 25688 ~ 29686 (+) True AMCG00018038
AMCG00018051 mRNA downstream 17995 490119 ~ 499466 (+) True AMCG00018051
AMCG00018050 mRNA downstream 29418 501542 ~ 513021 (+) True AMCG00018050
AMCG00018053 mRNA downstream 41216 513340 ~ 513737 (+) True AMCG00018053
AMCG00018049 mRNA downstream 44412 516536 ~ 520955 (+) True AMCG00018049
AMCG00018057 mRNA downstream 102980 575104 ~ 575385 (+) True AMCG00018057
TU142799 other downstream 103136 575260 ~ 579704 (+) True G114053
TU142800 other downstream 103136 575260 ~ 579704 (+) False G114053
TU142895 other downstream 305259 777383 ~ 794790 (+) True G114123
TU142941 other downstream 399221 871345 ~ 878979 (+) False AMCG00018072
TU143029 other downstream 747655 1219779 ~ 1220216 (+) True G114219

Expression Profile