RNA id: TU142784


Basic Information

Item Value
RNA id TU142784
length 977
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G114044
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 498327 ~ 499518 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTTTTTTCGTGATACTTTATTATTCCCTGTAGCACATTTAATATCAGGTAATCTGAATGGAGGAGGATACAGCCCACTGTAGTGCTGCTTCAGCACACTAACATTCACACGAACCCTTCGTCGTCTCCTGGGAGTCTCCGGTACAAAACACCTTTCCTTCCTTTCGCAGATGTAAAAACAGTTCTTGGTAAATAAGGGCATTGTGCCTCCCAATCGGAGCACAAAATCTTTAAAACTCTGCCGTGAGCAGAAACGGGGGACAAGCGAATCAACAGGAGCACCAGTGGGATGTTATAACTGGAGAAGAGTTACTAGAACTGGAATAGGTGCCAAAAAAGCAAAGTACAGGAGCGCTGTCTCCCACTGCAGTGACCAATATTAAAGGCACTCTAATGATGTCACAGAGAGCTGGGGCATTTAATTTCCTCAGAGCAATTGAATCAAAATCCAGATGTTTTTCCTTGAACAACTGAGCTCCTCTTCAACGATGGAAaaACCTGCTACGGGATTACGCCAGATCTCCGAGGGGGATAATTTCTTCAGTGACGAAAAACTCAATGGTCTCCTCCTCCCAGTCCTCGACGTTACTGTCCAGCTCGTCTGTGTCCacacctgaaacacacagacatgtcaGCGTGGGGGACACACCACGTCGAGGTTACACGTGTTCGTGTCTCTGCATGTCCAATCTCCAGAACAGAACAAGGCACAGGAGTTCCCACTGAAGCCGCGGTTTTACCTCCTCTGAGTTCCAGGCGCAGGGGTCTCTGCTCCTGGTACACCTGCATGGCCGTCTCCCGGTATTTACGATAGTCGTCCATCATGGTGCGTCTCTTGTCCACCAGTTCCTGAAGGAGGAAGTGAGCGATGGGTTAGAAAGCAGGTCACACGCCTCAAGGGCTTCTCCCAAGAAGACCACCGATGGAGGATGAACCAACGAAGCAGGTTTGATTGGATTAAAGGTTCTCTCACCTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142769 lncRNA downstream 26203 468917 ~ 472124 (-) True G114030
TU142932 lncRNA upstream 297475 796993 ~ 800471 (-) False AMCG00018074
TU142957 lncRNA upstream 379793 879311 ~ 889088 (-) True G114166
TU142977 lncRNA upstream 402802 902320 ~ 903843 (-) True G114179
TU142981 lncRNA upstream 413713 913231 ~ 913641 (-) True G114183
TU143020 lncRNA upstream 663372 1162890 ~ 1166493 (-) True G114213
AMCG00018047 mRNA downstream 9281 484037 ~ 489046 (-) True AMCG00018047
AMCG00018048 mRNA downstream 17007 473096 ~ 481320 (-) True AMCG00018048
AMCG00018042 mRNA downstream 299092 195021 ~ 199235 (-) True AMCG00018042
AMCG00018039 mRNA downstream 369953 45315 ~ 128374 (-) True AMCG00018039
AMCG00018041 mRNA downstream 455240 37682 ~ 43087 (-) True AMCG00018041
AMCG00018054 mRNA upstream 37160 536678 ~ 537994 (-) True AMCG00018054
AMCG00018056 mRNA upstream 47268 546786 ~ 551240 (-) True AMCG00018056
AMCG00018055 mRNA upstream 59004 558522 ~ 565582 (-) True AMCG00018055
AMCG00018063 mRNA upstream 80382 579900 ~ 590822 (-) True AMCG00018063
AMCG00018065 mRNA upstream 92275 591793 ~ 609889 (-) True AMCG00018065
TU142760 other downstream 55903 441085 ~ 442424 (-) True G114021
TU142989 other upstream 423989 923507 ~ 926739 (-) False AMCG00018077
TU142990 other upstream 423989 923507 ~ 926739 (-) False AMCG00018077
TU143224 other upstream 1485631 1985149 ~ 2006636 (-) False AMCG00018113
TU143230 other upstream 1507388 2006906 ~ 2067584 (-) False AMCG00018111
TU143313 other upstream 1782182 2281700 ~ 2288862 (-) True G114430

Expression Profile