RNA id: TU142800


Basic Information

Item Value
RNA id TU142800
length 1977
RNA type TUCP
GC content 0.53
exon number 2
gene id G114053
representative False

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 575260 ~ 579704 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACggacggagggagggagggagagcgagagagagaaagagagagaggcaggcagagaaaatcacacaaaagcacagaagCCACTCGTGATGTTCTGGCCGAGCGTGGAGTCGGACTGAAACCCTAACGGACTTCATGGCTCTCGGGCTCCGCAGAGCGCAGACGCGGACGTGTTAGAGCGGAGCACGGGTCCACTGCCGCAGCTCTGACCTGGTGTTTATGGCCCCCTGGAGTTCTTCCTGAGGAAGTGCGAACGACCGACGCCGACGAGACGAGAGTCCACTGGGTCCTGAGAGAGCGCAGCCCACCAGCGCCGCCAGCATGTCCATCATGGACCACAGCCCCACCACAGGGGTGGTGACGGTCATCGTGATCCTCATCGCCATCGCCGCGCTGGGCGCCCTTATCCTCGGCTGCTGGTGCTACCTGCGTCTGCAGCGCATCGGCCAGTCCGAGGATGAGGAGAGCATCGTGGGGGAGGGCGAGACCAAGGAGCCCTTCCTGCTGGTGCAGTACTCGGCCAAGGGGCCACGTGTCGAGCGCAAGACCAAGCTGACGCCCAACGGCCCCGAGAGCCACAGTTAACTCccgtgcccccccccccaacgcAACACTCTCAATACCTGTCAAACAAATGTGAACATCTGTACTGTGAACAATATCAATAAGCTGCTTACCTCCAGGATTTTGCTTTCCCCCCCGGACAAAGGGTGACACTGTTTGTGGAAGCAGGTGGGAGCATGTAACACACGCACGCACTGCGAGTGAGCACGGGGTGCAGACAACACATTCACCTGAGCCTGACCTTAAACAGCGACAGCTACTCCTCCTGTCTGTCCTCTCACCACTGGACTGAACACAGACTGGACCCAGTGAGAGACTAAGGTCAACGCCATCCCCCCATCCCAATGCAGCGTGAAGGCGGTAGAGCCCCAGCCGGACCACGGGCACCAACCGGCCCTGCAGAACAGACCCGTCGGTGCCGTTTTGCACTGGCTCAGCAATCCCTCATCCCCCCTTGAACTACATCATCCCGGACTCATTTGGGTCTTAAAGAAATATTTGTGACAAGTATTTGaacaaaacgaacaaaaaaatcacgtttttctttttcatgcgACATTACTAGCTGCTATTTTGTAGTGTTTGGTTGTTGAGTTGCGTGGCGTGGAGAGGCGAGACTGCCAGGAAGCCGCTAGCACCCCTCGGCCCATGATGGACACCAGGGGCGGGTCTTGCAGCCGCTCCACAGAAGTGTCCGGAGGGCCGCGGGGTTTCCTCTACAGGCGGCTGAGCGGTTTTGTCGGTCGTTAACGTAAGaatgtggaaatgtattaaCAGAACCCAATGTGATGTTTTTATACTGTCGTCTCACCAGCGGGGAGTGAAGCAGAGCACGTTCACACCCTTATTCACTTTAACTTTCTTCACCTCTTTTGCATTGTGTGTAAACTGTCACTTTCCCATtggcatgcatttaaaatcaatttgatcaaaatattacattttgccaCTGGATTCCAGTCACGAAcaggaatatatttttaagctaGAGgtggaagaaattaaatgaagtgGGACCAGAATGCAGAAGTCTAAAGCAGTCCTGTTGTCGTTGCGTTTGCCGCCGCTGTTCATGCATTCAGTGCCGTGTCATGAGCAGGTCGCATTTGCGCCGCGGTGCAGTGGTGTGACGGCAGTGCGCAGACGCTGGGTTGGTGGGTTGTAGGGGCACGAGTCACCCCCAGGCCGGCATGTCTAAAAGCACCGGCTGTTGTCATGTTCATTATTACGGTTGATAATTGTGTAGCACCAGAGTTCCCCACTTCTGTCTGTGAAATGTAGCACTGGATTGCAACAGCGCAGTTTAGTCTCTGCactgggttgtttttttctgtatgcaATATAAGCTAATAAAGTTTTCTAATTATGATTCTTCTAGTTGTTTATTAGCCTACATCTCTCAAATTAAAAACCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142803 lncRNA upstream 21756 553210 ~ 553504 (+) True G114056
TU142757 lncRNA upstream 103136 468788 ~ 472124 (+) True G114018
TU143011 lncRNA downstream 583188 1162892 ~ 1178095 (+) True G114205
TU143047 lncRNA downstream 687136 1266840 ~ 1268893 (+) True G114237
TU143063 lncRNA downstream 710851 1290555 ~ 1291851 (+) True G114253
TU143096 lncRNA downstream 953771 1533475 ~ 1534982 (+) True G114274
TU143130 lncRNA downstream 1284853 1864557 ~ 1865570 (+) True G114299
AMCG00018049 mRNA upstream 54305 516536 ~ 520955 (+) True AMCG00018049
AMCG00018053 mRNA upstream 61523 513340 ~ 513737 (+) True AMCG00018053
AMCG00018050 mRNA upstream 62239 501542 ~ 513021 (+) True AMCG00018050
AMCG00018051 mRNA upstream 75794 490119 ~ 499466 (+) True AMCG00018051
AMCG00018043 mRNA upstream 107266 465505 ~ 467994 (+) True AMCG00018043
AMCG00018060 mRNA downstream 24626 604330 ~ 609917 (+) True AMCG00018060
AMCG00018061 mRNA downstream 32785 612489 ~ 615795 (+) True AMCG00018061
AMCG00018062 mRNA downstream 43274 622978 ~ 637087 (+) True AMCG00018062
AMCG00018059 mRNA downstream 77978 657682 ~ 662116 (+) True AMCG00018059
AMCG00018058 mRNA downstream 88250 667954 ~ 671836 (+) True AMCG00018058
TU142895 other downstream 197679 777383 ~ 794790 (+) True G114123
TU142941 other downstream 291641 871345 ~ 878979 (+) False AMCG00018072
TU143029 other downstream 640075 1219779 ~ 1220216 (+) True G114219
TU143157 other downstream 1368137 1947841 ~ 1949593 (+) True G114320
TU143165 other downstream 1393222 1972926 ~ 1973683 (+) False AMCG00018105

Expression Profile