RNA id: TU142895


Basic Information

Item Value
RNA id TU142895
length 1422
RNA type TUCP
GC content 0.47
exon number 2
gene id G114123
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 777383 ~ 794790 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCAGTATGTTTTGTAGTACTTTATTGTAGTAACATCTCTTTGTACAACTCAATTAATGGTTAAATAGGTTTTAAATATGATCTGAAGTTTCATAAAATAGTAGATTCTAATGCGGATTTATTCTTCACAGCTCTGACTGCAGTTACAGTGTCTTAAAAAGTGAACAAGCTATTCATTCAATATTATACTCtattaaatagaaaatagttttaaattctCTGACTcgcatatcattattattaagtattatttaaaaaaatagcgATTAAATGCTGACTAGTTCCCAGCAGCTTTAACTGCCCTGCTCTCAGCCCAGCCCTGCTTTGTGCATCAAGAGCGTCCGATTACAACGCCCTGCTGTCGCTCTTCAAATTCGCGTCAAGATTCAAGAGTGAAAAGGTCTTTAAAACTCAAAAACCTCTTCGCCAAAACTgtgcttttgtttggttttcgtTCGGTGTTGCCACACCGCCCCCCCGCACCCTGGTAGTTATCGGATTCGAGTCGCGTCTGATGAGCAGTCGGTGTGTCTAAGCTACGGTAAATCGCTGGTGGTTAAGGCAGACATGGAGGCGTGGGTGGGGGGGCTATGATTAGTGCATTCTCTGTGCTCCACAATATTGCTGATTATAGAAGAAGCCCTTTGATAATCGATCGGTCTGCCCGTGTCGCAGGCACGGCATCGCCTGCCTCGGCTCTCGTCTAATATggctttcaaatacattgtgattattattattataagtactATTTTTTGACTACTGTATGAAAAGGACAGTTTAAACCCTGTGCTTCGTGGGGGTTATTTACACAGACCGATGGCAGGGGTGGAAGATGCTCGGGCTCCAGGGTGGAGAAGCGCAGAGCGACGGGTCTGGAAGTTTCGTCGGGTGTCGGTTTGTCCCGTACGGcgcccctctctccctcgctgTCGCCACACAGCGGCCCGTGACACAGCGGTACCTCCTGGATACCTCAAGCACTCAGCCCTGCCCCGGGGTCTGCGGACTGACCCTCCACAGAGCATTAAGATCTTCCCTCCGAGGTCAGAAACcgcagacacaaacagacattttatatttttacacactGAAAAAAAGCATCTTGAAAGCAGTGGATCAAtccctggactgtccctgtaaAGTGACGACAGACTCGCATGTCCTCTTGGTTTGTCTAGCccttctttgtgtttttattgtactgATGCGTATCGATATGGCTCGTGTAGCGTCGCTCCTCCGGGGGCGGCGGCCCTATCTGGAGATCAGGGAGCTGCTCTGGGACTGGCTGGAGGAGCGACGCTGCACTTTTCCACGGGAGCAAGACGCAGCACCTGCTCCAGCGAATATCGTGCCGCACATGTTCTCAGTACATGGCAGTTACAaattcatttcttttttgaGGGGTAGAGGGACTGTT

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0055004 atrial cardiac myofibril assembly biological_process
GO:0055014 atrial cardiac muscle cell development biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0070925 organelle assembly biological_process
GO:0061061 muscle structure development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142803 lncRNA upstream 223879 553210 ~ 553504 (+) True G114056
TU142757 lncRNA upstream 305259 468788 ~ 472124 (+) True G114018
TU143011 lncRNA downstream 368102 1162892 ~ 1178095 (+) True G114205
TU143047 lncRNA downstream 472050 1266840 ~ 1268893 (+) True G114237
TU143063 lncRNA downstream 495765 1290555 ~ 1291851 (+) True G114253
TU143096 lncRNA downstream 738685 1533475 ~ 1534982 (+) True G114274
TU143130 lncRNA downstream 1069767 1864557 ~ 1865570 (+) True G114299
AMCG00018069 mRNA upstream 93 763554 ~ 777290 (+) True AMCG00018069
AMCG00018071 mRNA upstream 16682 760423 ~ 760701 (+) True AMCG00018071
AMCG00018070 mRNA upstream 17664 746675 ~ 759719 (+) True AMCG00018070
AMCG00018068 mRNA upstream 38100 737140 ~ 739283 (+) True AMCG00018068
AMCG00018058 mRNA upstream 105547 667954 ~ 671836 (+) True AMCG00018058
AMCG00018072 mRNA downstream 76531 871321 ~ 889033 (+) True AMCG00018072
AMCG00018075 mRNA downstream 107394 902184 ~ 912776 (+) True AMCG00018075
AMCG00018076 mRNA downstream 124300 919090 ~ 921114 (+) True AMCG00018076
AMCG00018081 mRNA downstream 241560 1036350 ~ 1041531 (+) True AMCG00018081
AMCG00018084 mRNA downstream 467239 1262029 ~ 1265534 (+) True AMCG00018084
TU142799 other upstream 197679 575260 ~ 579704 (+) True G114053
TU142941 other downstream 76555 871345 ~ 878979 (+) False AMCG00018072
TU143029 other downstream 424989 1219779 ~ 1220216 (+) True G114219
TU143157 other downstream 1153051 1947841 ~ 1949593 (+) True G114320
TU143165 other downstream 1178136 1972926 ~ 1973683 (+) False AMCG00018105
TU143170 other downstream 1182214 1977004 ~ 1978727 (+) True G114330

Expression Profile