RNA id: TU143047


Basic Information

Item Value
RNA id TU143047
length 2054
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G114237
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 1266840 ~ 1268893 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtggcagcaatacgcttctgTACACCTGCCCCGACctactgttgtatatttttaaattttacaaaacaatcttTAGTGATCTATTTTTATACCCTGTTGTTTAAAAGGACAAtgccttttacatttttagactGAGGGGGAAGGgatattgtaaaatatacttCTGTTAATATAGAGTACGTTGTGTTTATAATCACCTTAATTCCCTATCGCGTCGCATACTTTTTCTAGAACTTTTTCAAGCCAACAGCCCGATCGAGCAAagatttatacttttataaatgTCATTGTGAAGAAGTTGCCCCATCATATATTAAATAGAGAAGCTTGTGGCTCCCAGAACAGCTTTTCTTTATAAAAaccttgtgtgttgtgtgtgatttgtatgtgtctgtgtgtgggctCTGGGATGCGACCATgtggtatttttacatttctaatggAATAAGCAGATATAAAAGCACAGAATTGGGGACTGTagtgaaaactttttttttttttttacttggctCTGTTTAAGGCTTTTTGGACAGACTTGTATGCaagattttaaatactttatccattatatacagctctggaaaaaattgagaccactgcaaaattatcagtttctctggttttactattgaTAGGTatgtgttaaaatgaacatttttgttttattctataaactactggcaacatttctcccacattccaagtaaaaacatgaatggaatgcaatggctgccatacatgtagagatgctgatttaagaacaatCTGCAGTGGTctccattttttccagagctgtataaacaCACCCATTtagatgtatatttaatattcactCTATTTCACTTCAGCGCTGAATAAATTCTTGCCAAAAATCGAACAAGCGAACACACAGGGGTGTCGTGCATGTGAAGCGGCGCTGCGCAGTTCGTAGCTCGTGTGACGCAGCATCACAGTTACACTAAATACACGGCGTTGGGTGAAAAGTGATTCTTCCTCAGATGTCTTATCGATCTGTTTCAGTCTAGAGATTTAAACTGGCATTAGGATGATCTCCAGGGAGCTGGTGTGGATTTTTTGGTACCCAAAAATGTTCCCAAAAACTTCCAAATGGAAGAAGGGTTGCCTGCCGGGGTTTTCATGCCTGGAGATGCTGTAAAAGTGACTGTTTTCCCAACAGAGCACTATTTTTGCAAAAATGTGGTCATACTTTGTCCAGTAAATTACCGAAACTGATGGGCAAACCTGCCCAGCACAGAGTGTATGAATGTCATATTCCAGCAGCTGTTTAgattatatgatatatatatgttgtgatTATGAAACTTTAGCACATTTTAGGATGtaggatatatatttattaagaagctattatataatttatatttatatatatatatatatatatatatatatatatatatatataattttaaaaatcctaCCATGTGCTCAAGTTGTGCTCATCCTTCTACTGTGTATGAAGACAGGACAGTCAGTCTGACGAGTGATCGATTCACGAGGTAATGAAAGTGGGGATTTTAAGGGatctgcttttcaaaataaactccACTTGGAAtacttttgtttcttgtaaGAATTGGAGGCTGCTTTCAAAGAGACGCGTCTCTCCTGTTGTGTTGCTCTACAGACACACAGCGGCGGCCCTAACCGCCGTTCGACAATATGAAACACTCCTACTCTCTCTTAATTCATTACTCTGttcatgtgtattttatttgtacttcagtatttattttcctgtttttttgtttttcatgtataaaTTATTGGATTCATGACTTCAGCCAGGACTCTCGCGTGCATTCAGCCCTCACCTCTCTGTCGAGCTCGGCCCGGAAAGCAGGAGTAATTTATTGCTGTAAATAAAGAGTCTGCTGTGCctgtttttgtacttttcaataaagcatttttctCTTAAGAACGAGTGGCTGCAGCTCTTTTTCCTCCGAGTGCTTCGGTGTGGACGGCCCATTGATCAGTTTCCTAGTGTGGCGAGAGGAAGCAAACCCCATTGCATCACTGCTTTGAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143011 lncRNA upstream 88745 1162892 ~ 1178095 (+) True G114205
TU142803 lncRNA upstream 713336 553210 ~ 553504 (+) True G114056
TU142757 lncRNA upstream 794716 468788 ~ 472124 (+) True G114018
TU143063 lncRNA downstream 21662 1290555 ~ 1291851 (+) True G114253
TU143096 lncRNA downstream 264582 1533475 ~ 1534982 (+) True G114274
TU143130 lncRNA downstream 595664 1864557 ~ 1865570 (+) True G114299
TU143159 lncRNA downstream 681368 1950261 ~ 1950500 (+) True G114321
TU143160 lncRNA downstream 682322 1951215 ~ 1951599 (+) True G114322
AMCG00018084 mRNA upstream 1306 1262029 ~ 1265534 (+) True AMCG00018084
AMCG00018081 mRNA upstream 225309 1036350 ~ 1041531 (+) True AMCG00018081
AMCG00018076 mRNA upstream 345726 919090 ~ 921114 (+) True AMCG00018076
AMCG00018075 mRNA upstream 354064 902184 ~ 912776 (+) True AMCG00018075
AMCG00018072 mRNA upstream 377807 871321 ~ 889033 (+) True AMCG00018072
AMCG00018091 mRNA downstream 240101 1508994 ~ 1511372 (+) True AMCG00018091
AMCG00018097 mRNA downstream 480336 1749229 ~ 1752065 (+) True AMCG00018097
AMCG00018096 mRNA downstream 501263 1770156 ~ 1779659 (+) True AMCG00018096
AMCG00018104 mRNA downstream 527509 1796402 ~ 1802228 (+) True AMCG00018104
AMCG00018102 mRNA downstream 542542 1811435 ~ 1846910 (+) True AMCG00018102
TU143029 other upstream 46624 1219779 ~ 1220216 (+) True G114219
TU142941 other upstream 387861 871345 ~ 878979 (+) False AMCG00018072
TU142895 other upstream 472050 777383 ~ 794790 (+) True G114123
TU142799 other upstream 687136 575260 ~ 579704 (+) True G114053
TU143157 other downstream 678948 1947841 ~ 1949593 (+) True G114320
TU143165 other downstream 704033 1972926 ~ 1973683 (+) False AMCG00018105
TU143170 other downstream 708111 1977004 ~ 1978727 (+) True G114330
TU143173 other downstream 710153 1979046 ~ 1980379 (+) False AMCG00018106
TU143174 other downstream 710153 1979046 ~ 1980379 (+) False AMCG00018106

Expression Profile