RNA id: TU143139


Basic Information

Item Value
RNA id TU143139
length 6344
lncRNA type sense_over
GC content 0.46
exon number 2
gene id G114304
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 1751896 ~ 1878375 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCAAAACAGAGCAatgcaagacaaaaaaatattattcacaattaacaaaaagaaatcaGTGTTTCCTAATAACGCTAATACACTATGGGAAATAGTTAtttcatagaaaaaaaacaataaaaagtggTATGatatgaagaaaatgtaatagtttaaaAACACGAGTTTACAAAGGCAAATTGCATTTTaccagaattttttttttcttcgtcGTGCAAACATATTACTTCTTAAGATACATTGTTCTAGCAATGATTAATAGAGAAAGTTACTACTGAAAAACAATAGATTGTCTTACTATTACATTTAATGGTCTTTCTCACAGGAGTAGACATACAAAACTACAGATTCGATCTCTTCTATAGAGTCGGGGCTCAAGTTTCACAGACGTCTACTCTTTTGGTTGTGTGGGCCGCGGAACAAGCGTCAatttacaaaaactaaacaaaaacaaaagcatacagtggaaaataaagtaACCGTATGGAAAAAGgggttgtattttcttttttggtgatTGGCACAGTTTACAGAACACACCCCTCCGTCCCCAGGCCTTGAAGAAACTGAGGTTCGATCAAGCGGTAATGGAAAGGAAGATGTACAAGTATTTCAGCGCTTTGAACCATCGATGCTGTAAGGATGATGACAGGAATACTGACGACGGTGTGTGATTCCTTATTTTGGTTGTGCGGTGGGAGTGAACAACACAATCCCAGTTTGTCACGGAGGGGGATGTTACCAAAAAGTGTATTGTTGTTCTGTACAAGGGAGAAACCCGGGGcgctgatttattattattttttacaggatttATTACGTTTGTTTCCAGTAGAATCAGACTTGGAGCCGCTGTTTTCATGGGCCCgatcccccccaccacctcccacCCCCTATTTAAGtactttttatacatttgaaacaacaacatcaacaacaataacagaaatCAAACTCAAATCCTAATACACAACACAGGCCCAGTTAGTAAAACGAGACAGTTAATGGGGGCCTGCGTCTCTCGTGGAACTCTCAATGGAGGGCCGAGGTGGAGGGGGCGGACCCTCTCCGTCGGCAAGCAAACACACGGAGCACTTCACACACGGGGACGTCACACGAGCACGAGGACACCGGAAGATTGAGAGATTCACAGCAAGGATATCTTACAGTCTGAAGCAAAGTCTCTGGCGGTGGAGTCTGGGGGTCTGGGGTTCTCTCTCCCCGCCACCTGCCCGGCTCCCTCTGCGGCCCCCCGAAGTCCAGGTGTGCTTTTGCTTGTTGGATCGAGAGTCCAGAGCCGGTCAGAGCCGGACCGCTTGTGCTTTTGAGAGGATGCGCGCGGGGGCGGCTGCCTGAGccactttcatgtttttttgtctttgtcgTCGTTGTCGTTGTTTTTCTTCACGAACCGTAAAAAAATAATTCGGCCCGTGACTGAGGGAAGAAAATTTCAAATCCACTAAAAAAactaaggaagaaaaaaaggtgGACAGATTCTAGTGTCAGTATTTGTTAGTCACATTATCgcgattaaaaaacaaaaacaaagcactgaTGCCTTGGTTTCATGTGCATTCACAAAGCTCgtcatacaaatttaaaatcaacatCTAGACCAAAGTCTCTcttattacagtaattaaaaaaataaggaaattaaaaagcagagaCTACAgttccacctcctcctctctgaCTTTGGATTATCGTCTTTCTGGTCGAAATGTTTCCCTTTCACCTTTTCGGCGTTTTTGCGAAGGCCGGAGTAAGTCCCGAAGGTTCCCTGTGATGGCCACAGCTTTGGCACGGGTCACTGTGCCTCCCTGGCCCTCGGGGGCCCCGGCGTGGCGTGGAATGCGCCGGATCCTGGCGGACAGCGAGAGTCCGTGCCGGGGCCCCTCCGCCGTCCCACGTGCTCTCCGGCGCTTGCGGTTTGAGTGAGGGCTGCGGCTCGGTCGCTTCGGTTTCTCTGGCGTATTGGCAGTACAGTGCGATGGCGGCAGCCCAGGGAAAAAGCACGAGACGCGGTGATTAGTCAACTCGGTCCCTTGTCCGCATTTTCATTTCGTCTGGTCTTCGGTATCTACCGTGGTTCCCTACTGTAGCCGGTATAAAAGGGGCACTGAGCACTGGTTCATGATATGTTGGTGAAAAAAGTCCAATAGATCGTCGATTTGCCCCTCTCttaccaaacaaacaaataaaatgaaggacACAAAATGAGAGTAAGAACAGTTAATGCCTCAGGTCCACAGCTCTTCCGATGTGGAATGTTTCGCTGGTCATGATTCTAGGGGAAACCAGAGTGACCCACTAGAAACACATGTACAAGTAACACAAAGTGGTATAAATTTGATCCCTTTTGAAAACTCGTATCATTTGTTTTGTAGCACTGAGTAAAATGAACTCCTAGATTTTAGCAGAAAACAAGAAGCTCTGTCCACTGCAGCAgaatttcccacaatgcaccaggAAACTCACCTGCACCGAGCAATGGACAGCAATGGTGCGAATTAAAACACACTGCCTTCAGATCCCCGCCCCTGTGAGCTGAGGTCAGGGAATAACTTTATAATCACCTTGTGTGTTAATCGCAGGAGCACAGCTGCTCTTTCCATCTCTGTAACTGAAGTCCACAGCAAACTGCAGAGCCGTCTCCAGCTCCGTCACCTGGCAGGCTGTGCGCTGCTTCCAGATCTGTTTGTTTACAGTACGATTTCCTCTTTAACAGACACAATGATGCACTAGTGGTCGGCACGGCATTAACACGCCAAGCGCCTGGAATTATAAAATGTCACGAATCGTACGGCAACACGGGTTCATGCAAGTAAAAGAATCGCGTGAGGAACAGGTTTCCACAAGTCTTTGCCTACTGTATGATCCAttgtaaacaaatcaataaaattaaaacaagttaaaatgCTGTGCAAGAAAATAAGTGATTACTATCAATCTAATTCATTGTTGTCTTAAGAAAACCAAATATTTTATGCAGCAGAATCGGAATAGGGGTAACGCTCAAAGGCCAAACTACTCAACAGCAAATAAAGGTGGAATAGAAAGAGTGCACCCGCCTCCTGTAGGTTTAAAATGGTGTAAAGATAGACTGATGGCCGAGAGACGCACAACCCCCCCACGGCCCAGAATGCACTGCTCAGAGGGAGAGCGCTGTCTTTGAACACTACAGCTGTATCTACAATCCAACAGATAAACACATCGAAATAATGACTCTGAATGAACGTACTGCGAACGTGCGGTCAGGAGGAAACTGGGTTCTGgttttatacaaaaaataaaagggtgGGATGGGTATTAAAAAGATGAAATGCttgcatacacacaaacacgcacaaaCACCGAAGTGGGTTGTGGGGGTTGTGGGGGGTGTGGGGGTCCGATGGTGAAATGGGACCTTCAGTGGTGCTCATTTGAAAATGACGGGGCTCTGCATTATTGACAATCGAGAATCTGTGCCTAAACagggtgaaaaaaatataatgaagtattttgaaggaaaatgaagcttcacattgaaatattgataatgtttgcattgtttttatcaGATTTGTGAATTTAAGAGTATGAGCGCGTCAGGTTTAGCACTTTATCTGGTTTTAAATCTGAGATCTCGCTGAACTCTCCTGTTCCTACAATCATCTCAGATGCTTGCAAATCAAGAACTCTCTTCTCTTTTACTCACTGGTGTTTTTACCATTCAAAGCCTAATATATTTGAGGTCTGTTTccttattattttgaatgtatactttttaaatCCCATTCCAAACCCGTGTTCAGTGTCTGTTCAATCACAACATGCCCCAGTTTAAACCATCGCTCACGTTCAGGGCCCAGCGCGTCTGAACACGGCGGAGAGACTGTAGCTTCTAATCTGACACAAATTGTGTTTAGTGAGATTGTTGAAGGCAATACGtttgatttttatatacatttacgATTCACAATTTTTCCTGTATACCGCTTTTCATTTTGGGAATTGTCATGTGTCATTGTGGGAAACTCGACAATATTTGTTGAGTTTAATCTTTTTATAAAGCTAGTGATTCAGTGTCGACTGATTTGTCACAATAATTGACACTTGACTCACAGATGGAAGGCAAAAATGTCTGAAtatcagtttattaaaaaaaaaaaaaaaaaaatcattatttttcctcttcctctgacAATAAACGTCACCCTTTAGGTCCCTATGCCTGCGTGGAGGCCCGATCATTGTCTAAATTCAGACTGAACACACACTGCTTTATATGAACTAATATCCAACACACTCTCTCAACAGCAGCCCCGATCATTCATTCCTGCTTTCCCAAAGACACGCTCACCTTCTCCACTGGACTCTCAGTCGGGCCCCCGGGCCGAGCAGCGCTGGGTTAGAAGCACAGAGCCGTCATTACGGAGGGGCTTGAGTTGGGGCTGAAATGACATTCCTGTCGAGTGTAAACCTCTGCACGAGCTGATGAACACAGACCTCCAGGGCAAGACGGACAATTTAACTTGTGACCTCTctacgcgcacacacacactgaggaacaGCAGGCATTTATTCTGCTTCTGCACCTCATGCTTTACTCACAGTGTACAATGTGGATCTAAGCACGGTTAGGAGAATACCCCCCCACACAGGAAAAGCCAGCGAGaacttcagattaatttaattgtgaaaGGACTGTTACATCAGAGCAGTAGTCATGTACAGTTTGCCTTGAATGAAAGACACAAAAATGactaacagagagagagagcgcaagaGATGAGGGATGAAAAAAGCAGTATTTCTATTGTAGGCtttaaagatatttatatatCGCAAGATGAACTGGAGAACTCAAACATTATTTTAGCCTCTTCACTGCCTCCTCTTCATCGCCGGCCGCAGCGCTGATCCGAGCGCGACACTCAAAAGCACTTCTGTGTCGAATAGCTCTGAAGAGGGAAAATCGAGTATCTACcactctttattttttgtgtccaCTGGCCGAGACACGGATACAGAAGGAGGATTTTACCAACAGGGACCATTAAGTTATTTTCCCACGTGAAGCACGGTGACAACCAGGCGGCCGAGGAGCCGCTGTCCGAGGGGCGCCACTCTCGGGGGTCCGGCGATTCGCCACGAACGCCATTTTCTCTGCAGAGAGACGCACAAAGGGGCCCTGGACTTCTCTCTGTGGGTTTTGTTGTTGCTACAGATGAGTCCAGATTCACATCCCCTGTATGTGTCCCTCTTCCATCTCTTTGACCCGAGAGCTGCTCTTTCGTGTGTCTGGTGCAGCtgccatttaatttattgtccaATATAGTTGCTAACACACATCCCTGTGCAACTTGGCTGCACACAGATGTTCGCTCGAATCGATTCAGAGGTTTTTGAGCTGCCGTGAGGTTGAACTGCCAAATCCAGGCTGTGAGCAGCACTTAATACCCCGGCTTTGTGGTCATCGTCTCTACAGCAGAGAAATGGCTCCTTCGGGGGTCTAACCCAGGTAAACCCATCATAAAGTACTTGAGACGAGAGGACAAAAAAATTGATATTAAAGAAAGAGCGAAAAAAAGAAGTGCCGGATTCCAGTGGCGTTCACATGAGCGCTGGGAGGGAAGCCGCCAGGCGGAGCGATCAGACGGCCGGGTCCGAGACGTGCCGCTCCGTCTCTCGCTGACTTTATGAGCAGGACGCCATCTGTGCGCTTCTCCGTGATTCAGACGGCAGAACTGAAGAAAGCACCTTGACTCGGCTCTTCATATTCAGCTCCCCAATCGATGGGGCCGACCCAACGCGGCAGTCGGACGATCAATTAAGGGAAATTGATTGTTCTCCCTCTCCTGCCCCCTCACTGAAGAAAATTCAAGCTTTTAAGACGCGCGTCTCGAGCCTCAGGCACGGCCTCTTCAAATTCGACAGCTTTTCACATCAGGTCATGTACCGGCCTCTCACATACTGTAAGTAAACCGTTGAgaagtaaagtaaaaaagaagGATTGGAATTATCCGATAGTGTTGACGCGTTGGGAACGCTCACAACAACAAGAGACAGACAAACCAGTCACAACCACACCTTCAATTCAGAATCCACAGTGCCAGAGAGGCATGGCGGCCCGGAGACCCGAGCGTCTCCTGAGTGTCCGGCACCGGCCTCGGCCTCTGTGCTCTACAGCCGCTCCACCTCGTCCAGCTGCTGCTCTAGGATGACGTCGTGCCCCTGGAACTTGAAGTAGCCGCGGAACTTCTTCTTCTGCAGCATCAGGGGGAACCAGAACACGTCGTCCGCCCACATCCGCTCGAAGGGGATCTTGTCCCAGTCGAACCACTGCGGCCGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143110 lncRNA downstream 216911 1533456 ~ 1534985 (-) True G114286
TU143095 lncRNA downstream 238254 1512993 ~ 1513642 (-) True G114273
TU143085 lncRNA downstream 483080 1268293 ~ 1268816 (-) True G114264
TU143020 lncRNA downstream 585403 1162890 ~ 1166493 (-) True G114213
TU142981 lncRNA downstream 838255 913231 ~ 913641 (-) True G114183
TU143216 lncRNA upstream 136881 1983652 ~ 1984149 (-) True G114363
TU143220 lncRNA upstream 138378 1985149 ~ 1985721 (-) False AMCG00018113
TU143345 lncRNA upstream 521659 2368430 ~ 2375735 (-) True G114456
TU143460 lncRNA upstream 789730 2636501 ~ 2647811 (-) False AMCG00018142
TU143462 lncRNA upstream 821689 2668460 ~ 2668661 (-) True G114554
AMCG00018101 mRNA downstream 2876 1748745 ~ 1749020 (-) True AMCG00018101
AMCG00018098 mRNA downstream 3315 1746150 ~ 1748581 (-) True AMCG00018098
AMCG00018100 mRNA downstream 5996 1739851 ~ 1745900 (-) True AMCG00018100
AMCG00018093 mRNA downstream 73551 1677834 ~ 1678345 (-) True AMCG00018093
AMCG00018095 mRNA downstream 88737 1639671 ~ 1663159 (-) True AMCG00018095
AMCG00018103 mRNA upstream 13742 1860513 ~ 1874199 (-) True AMCG00018103
AMCG00018108 mRNA upstream 101218 1947989 ~ 1970490 (-) True AMCG00018108
AMCG00018107 mRNA upstream 128426 1975197 ~ 1978819 (-) True AMCG00018107
AMCG00018113 mRNA upstream 139525 1986296 ~ 1990555 (-) True AMCG00018113
AMCG00018111 mRNA upstream 160574 2007345 ~ 2028977 (-) True AMCG00018111
TU142989 other downstream 825157 923507 ~ 926739 (-) False AMCG00018077
TU142990 other downstream 825157 923507 ~ 926739 (-) False AMCG00018077
TU142760 other downstream 1309472 441085 ~ 442424 (-) True G114021
TU143224 other upstream 138378 1985149 ~ 2006636 (-) False AMCG00018113
TU143230 other upstream 160135 2006906 ~ 2067584 (-) False AMCG00018111
TU143313 other upstream 434929 2281700 ~ 2288862 (-) True G114430
TU143456 other upstream 762374 2609145 ~ 2609479 (-) True G114549
TU143816 other upstream 2214040 4060811 ~ 4064248 (-) False G114838

Expression Profile