RNA id: TU143157


Basic Information

Item Value
RNA id TU143157
length 1244
RNA type TUCP
GC content 0.51
exon number 3
gene id G114320
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 1947841 ~ 1949593 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tggaaaatgaattaaaagcaTGCGTGGGAGTCGGGCAAATCAGATTTTACTCATTGCACCCCCCCGTGGAGATGTTCTCAATCATTGTCTTGATCAACTCCATagctttgaggaaaaaaaaaaaagaataaaaacttGTCACAAGACCCAGGGtaggattgttttttatttaacacagacCGTCTCGATTGTTAAGAACAATGCGTGCATTCCAGCTGCAAGAGGCCGTCCTAGTGTTCAAGTGCGTGTCAGAAGGCCGGGACCCTCTGGTCCATCCTGCAGCGAAGTCCCGCATCAGGTCTGGACACAGCTGGCCAGATGTGAGCGCTTGCCGATGGAGTTTGTGTTTAGCAACGGTCAGACAAAAGAAATTCACAGTCCCACACTAGATTAAAAGGTCACAGGCCTgagcaaaataaaacctgattatGTACAAATATCAGACACAATAAATACCACGCTCTCCACCCTGTGTAGTAGGTTAATGTTCTCCAGTGTTCACACCGCTATTAATGTATCTAGGCTTTTAGGCAAACGCTATGACAGCTAATAGCTTGTTACACATCACTTTCAACTGACACCAATTGCATTAGACGACATTAATTAAAGTACTATTTTAACAACAGCCACGGTGGAGGTACAGTACGTGAGTGGACCACGTTGGCACAGACTGAGGGGGTGTGTTTTGCAAGGGAAGGCGGGGGGGAGGGTCCACGCAGGCTCCAGtagtgcccccccacccccattcccTCTGAAGAGCAGCCAACCCCTCCCTCGGCCGATGCCTGGAGCCTttatacagatttaatttaattgaacttcatttaaatgaaatcgTCGGTCCGTTTTCTCCAGCAtcgtaaacaaaaaaaagagtcCGTCTTCCCCACAGCGGCTCCGCAGACGAGCTGTCGTCTCCGGCCCGGTCCGAGGGGCGTCTCTGGCCGTCCTCTCCCCCGACTCCTCAGGGTTTGTGTTTAAAGTGCGCCTCCATGCGTACTCCTGTGGGAGCATCGGCCGGTTGATGACTTTCTGGAAAGCAGCGATCCAGGCGCGCTGGTCCAGCTCCGTCTCGCAGGCGAAAAGGAACTTCCTGTCCGGAGTGACGATGGTGATGCCGAACTGCCAGTGCTGCCCCTGCGTGGAGGGCGGGAGGCCGGCCAGCACCGTGTAGTTGTTCTCTTTGCTCCCGATGAACACTTCCCCGCGAGCGTAGGCGTCAAGGGATCTTTGAAGTACATTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143130 lncRNA upstream 82271 1864557 ~ 1865570 (+) True G114299
TU143096 lncRNA upstream 412859 1533475 ~ 1534982 (+) True G114274
TU143063 lncRNA upstream 655990 1290555 ~ 1291851 (+) True G114253
TU143047 lncRNA upstream 678948 1266840 ~ 1268893 (+) True G114237
TU143011 lncRNA upstream 769746 1162892 ~ 1178095 (+) True G114205
TU143159 lncRNA downstream 668 1950261 ~ 1950500 (+) True G114321
TU143160 lncRNA downstream 1622 1951215 ~ 1951599 (+) True G114322
TU143161 lncRNA downstream 3281 1952874 ~ 1953264 (+) True G114323
TU143164 lncRNA downstream 20187 1969780 ~ 1970409 (+) True G114326
TU143166 lncRNA downstream 23333 1972926 ~ 1973683 (+) False AMCG00018105
AMCG00018102 mRNA upstream 100931 1811435 ~ 1846910 (+) True AMCG00018102
AMCG00018104 mRNA upstream 145613 1796402 ~ 1802228 (+) True AMCG00018104
AMCG00018096 mRNA upstream 168182 1770156 ~ 1779659 (+) True AMCG00018096
AMCG00018097 mRNA upstream 195776 1749229 ~ 1752065 (+) True AMCG00018097
AMCG00018091 mRNA upstream 436469 1508994 ~ 1511372 (+) True AMCG00018091
AMCG00018105 mRNA downstream 23245 1972838 ~ 1973924 (+) True AMCG00018105
AMCG00018106 mRNA downstream 30593 1980186 ~ 1982566 (+) True AMCG00018106
AMCG00018115 mRNA downstream 130591 2080184 ~ 2095126 (+) True AMCG00018115
AMCG00018114 mRNA downstream 145962 2095555 ~ 2104782 (+) True AMCG00018114
AMCG00018116 mRNA downstream 167022 2116615 ~ 2118790 (+) True AMCG00018116
TU143029 other upstream 727625 1219779 ~ 1220216 (+) True G114219
TU142941 other upstream 1068862 871345 ~ 878979 (+) False AMCG00018072
TU142895 other upstream 1153051 777383 ~ 794790 (+) True G114123
TU142799 other upstream 1368137 575260 ~ 579704 (+) True G114053
TU143165 other downstream 23333 1972926 ~ 1973683 (+) False AMCG00018105
TU143170 other downstream 27411 1977004 ~ 1978727 (+) True G114330
TU143173 other downstream 29453 1979046 ~ 1980379 (+) False AMCG00018106
TU143174 other downstream 29453 1979046 ~ 1980379 (+) False AMCG00018106
TU143175 other downstream 29453 1979046 ~ 1980379 (+) False AMCG00018106

Expression Profile