RNA id: TU143161


Basic Information

Item Value
RNA id TU143161
length 391
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G114323
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 1952874 ~ 1953264 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGGTCGTGGTTTGGAGTTTGGCACAGAGTGATTGTGGAGTCTCTAGGGACCTGCTGAGACGATGCTTACGTCATTTTTGTTGAAGTACTTCAAGGCCCCCTCACGCTCGGACAGGATGAATTTTCTGCTTAAAAACTGTCCATTGTCTCGGCCTCGTTTCCACAGAAACCCTTCTCTGTATCCTGCAAGACAATAAGGACGAGTTCAGCCAATCACGAGTTAAACTGCTTAAATGAACAAGCATGGGGCACgtttaaacacagaaaagcaatCTTCACTGTGAAACACCGTCAAGAAAAGAACTGAAAGAAAGACGCTGTGCTGGCAACGTGACATTACACCAAGGTAAACTTCATAAAGGTATGGAAGGTgaagtaaaacataaattgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143160 lncRNA upstream 1275 1951215 ~ 1951599 (+) True G114322
TU143159 lncRNA upstream 2374 1950261 ~ 1950500 (+) True G114321
TU143130 lncRNA upstream 87304 1864557 ~ 1865570 (+) True G114299
TU143096 lncRNA upstream 417892 1533475 ~ 1534982 (+) True G114274
TU143063 lncRNA upstream 661023 1290555 ~ 1291851 (+) True G114253
TU143164 lncRNA downstream 16516 1969780 ~ 1970409 (+) True G114326
TU143166 lncRNA downstream 19662 1972926 ~ 1973683 (+) False AMCG00018105
TU143178 lncRNA downstream 30387 1983651 ~ 1984150 (+) True G114332
TU143197 lncRNA downstream 53642 2006906 ~ 2021630 (+) True G114346
TU143212 lncRNA downstream 95307 2048571 ~ 2050177 (+) True G114359
AMCG00018102 mRNA upstream 105964 1811435 ~ 1846910 (+) True AMCG00018102
AMCG00018104 mRNA upstream 150646 1796402 ~ 1802228 (+) True AMCG00018104
AMCG00018096 mRNA upstream 173215 1770156 ~ 1779659 (+) True AMCG00018096
AMCG00018097 mRNA upstream 200809 1749229 ~ 1752065 (+) True AMCG00018097
AMCG00018091 mRNA upstream 441502 1508994 ~ 1511372 (+) True AMCG00018091
AMCG00018105 mRNA downstream 19574 1972838 ~ 1973924 (+) True AMCG00018105
AMCG00018106 mRNA downstream 26922 1980186 ~ 1982566 (+) True AMCG00018106
AMCG00018115 mRNA downstream 126920 2080184 ~ 2095126 (+) True AMCG00018115
AMCG00018114 mRNA downstream 142291 2095555 ~ 2104782 (+) True AMCG00018114
AMCG00018116 mRNA downstream 163351 2116615 ~ 2118790 (+) True AMCG00018116
TU143157 other upstream 3281 1947841 ~ 1949593 (+) True G114320
TU143029 other upstream 732658 1219779 ~ 1220216 (+) True G114219
TU142941 other upstream 1073895 871345 ~ 878979 (+) False AMCG00018072
TU142895 other upstream 1158084 777383 ~ 794790 (+) True G114123
TU142800 other upstream 1373170 575260 ~ 579704 (+) False G114053
TU143165 other downstream 19662 1972926 ~ 1973683 (+) False AMCG00018105
TU143170 other downstream 23740 1977004 ~ 1978727 (+) True G114330
TU143173 other downstream 25782 1979046 ~ 1980379 (+) False AMCG00018106
TU143174 other downstream 25782 1979046 ~ 1980379 (+) False AMCG00018106
TU143175 other downstream 25782 1979046 ~ 1980379 (+) False AMCG00018106

Expression Profile