RNA id: TU143170


Basic Information

Item Value
RNA id TU143170
length 474
RNA type TUCP
GC content 0.67
exon number 3
gene id G114330
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 1977004 ~ 1978727 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACAATCAATGGCAAGGAGCTCTTGGGTTCAGTGGAACCGGCAGCTGCTACTGACACCCTTCACGCGAACGCGGCGGCGCCGAGATGATCGGAATTCGTACTTTGAGCGCGAGCGGCGCCGGTTGTCATGGCGGCGGCGGCCGGGGCTGGGCGAGCcggaggagctgctgctgctggagctgcgGGACGAGGAGGACGAGCCGGAGCGGCTGGACGCGGAGGTCGAGCTGGAGCCGCTGGACGAACCCGAGCTGGAGCccgagctggagctggagctggagctggagcgaGACcggctgctgctgctccctgTGGACGCGCTGCGGCGCTTGCGGCCCTTCTCTCTGCCCCGCTCCTTGTCCCCGCCGGCCTCCTTCGTGCCCGTCTTCTCCTTCCCGCGCTCCTTCGGCTTGTCCTCGGAGCGGTCCTTTCGTTTCGTAGGTGACGGCGCCaTCTTTCCCGTAGTAAAAAATG

Function

GO:

id name namespace
GO:0002011 morphogenesis of an epithelial sheet biological_process
GO:0055113 epiboly involved in gastrulation with mouth forming second biological_process
GO:0090504 epiboly biological_process
GO:0001702 gastrulation with mouth forming second biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143166 lncRNA upstream 3321 1972926 ~ 1973683 (+) False AMCG00018105
TU143164 lncRNA upstream 6595 1969780 ~ 1970409 (+) True G114326
TU143161 lncRNA upstream 23740 1952874 ~ 1953264 (+) True G114323
TU143160 lncRNA upstream 25405 1951215 ~ 1951599 (+) True G114322
TU143159 lncRNA upstream 26504 1950261 ~ 1950500 (+) True G114321
TU143178 lncRNA downstream 4924 1983651 ~ 1984150 (+) True G114332
TU143197 lncRNA downstream 28179 2006906 ~ 2021630 (+) True G114346
TU143212 lncRNA downstream 69844 2048571 ~ 2050177 (+) True G114359
TU143296 lncRNA downstream 283949 2262676 ~ 2266751 (+) False AMCG00018119
TU143377 lncRNA downstream 431750 2410477 ~ 2412789 (+) True G114484
AMCG00018105 mRNA upstream 3080 1972838 ~ 1973924 (+) True AMCG00018105
AMCG00018102 mRNA upstream 130094 1811435 ~ 1846910 (+) True AMCG00018102
AMCG00018104 mRNA upstream 174776 1796402 ~ 1802228 (+) True AMCG00018104
AMCG00018096 mRNA upstream 197345 1770156 ~ 1779659 (+) True AMCG00018096
AMCG00018097 mRNA upstream 224939 1749229 ~ 1752065 (+) True AMCG00018097
AMCG00018106 mRNA downstream 1459 1980186 ~ 1982566 (+) True AMCG00018106
AMCG00018115 mRNA downstream 101457 2080184 ~ 2095126 (+) True AMCG00018115
AMCG00018114 mRNA downstream 116828 2095555 ~ 2104782 (+) True AMCG00018114
AMCG00018116 mRNA downstream 137888 2116615 ~ 2118790 (+) True AMCG00018116
AMCG00018121 mRNA downstream 221708 2200435 ~ 2203330 (+) True AMCG00018121
TU143165 other upstream 3321 1972926 ~ 1973683 (+) False AMCG00018105
TU143157 other upstream 27411 1947841 ~ 1949593 (+) True G114320
TU143029 other upstream 756788 1219779 ~ 1220216 (+) True G114219
TU142941 other upstream 1098025 871345 ~ 878979 (+) False AMCG00018072
TU142895 other upstream 1182214 777383 ~ 794790 (+) True G114123
TU143173 other downstream 319 1979046 ~ 1980379 (+) False AMCG00018106
TU143174 other downstream 319 1979046 ~ 1980379 (+) False AMCG00018106
TU143175 other downstream 319 1979046 ~ 1980379 (+) False AMCG00018106
TU143176 other downstream 319 1979046 ~ 1980379 (+) False AMCG00018106
TU143421 other downstream 587357 2566084 ~ 2567535 (+) True G114518

Expression Profile