RNA id: TU143216


Basic Information

Item Value
RNA id TU143216
length 498
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G114363
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 1983652 ~ 1984149 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NNggggatcaaatacttctttccctcactgtatatatatatatatatatatatataaaataatgttttttcatcTGCTACTTTTGCGGTGGAACTGTGGACACACGTGAATAACAGCACTTGTACCTCCTCCTCTGAGGGGTGTCAGTTGATCAGTTTGCTTTCTGTTCATGCCCTTCTGGCCAGCTTTGATccgctctttctctctcacagccCGTTTGGTTGGATTTGGGCTCCTGTTCATCCACACCTACACAAAGCTTGTGAAATGCCCTCCCACCGCCTGGTCTGGGagaagtttatatatataaaaaaaggggAGGATAACAATTTACCCTAAATTAAGTTCTGAACACGGTGTATTCTGAGctgctgtggttttattatgtttagGCTGATGCTTCTATGCAGATTTAACTTAATCAAATAAATCTGAACGTGTTCTCTGACCTATTTCTAGTTGTGTGGGGAATGTGCttcaatgcaaataaaacttTGA

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143140 lncRNA downstream 105277 1842143 ~ 1878375 (-) False G114304
TU143139 lncRNA downstream 136881 1751896 ~ 1846771 (-) True G114304
TU143110 lncRNA downstream 448667 1533456 ~ 1534985 (-) True G114286
TU143095 lncRNA downstream 470010 1512993 ~ 1513642 (-) True G114273
TU143085 lncRNA downstream 714836 1268293 ~ 1268816 (-) True G114264
TU143220 lncRNA upstream 1000 1985149 ~ 1985721 (-) False AMCG00018113
TU143345 lncRNA upstream 384281 2368430 ~ 2375735 (-) True G114456
TU143460 lncRNA upstream 652352 2636501 ~ 2647811 (-) False AMCG00018142
TU143462 lncRNA upstream 684311 2668460 ~ 2668661 (-) True G114554
TU143599 lncRNA upstream 1011886 2996035 ~ 2998258 (-) True G114658
AMCG00018107 mRNA downstream 4833 1975197 ~ 1978819 (-) True AMCG00018107
AMCG00018108 mRNA downstream 13162 1947989 ~ 1970490 (-) True AMCG00018108
AMCG00018103 mRNA downstream 109453 1860513 ~ 1874199 (-) True AMCG00018103
AMCG00018099 mRNA downstream 213718 1756664 ~ 1769934 (-) True AMCG00018099
AMCG00018101 mRNA downstream 234632 1748745 ~ 1749020 (-) True AMCG00018101
AMCG00018113 mRNA upstream 2147 1986296 ~ 1990555 (-) True AMCG00018113
AMCG00018111 mRNA upstream 23196 2007345 ~ 2028977 (-) True AMCG00018111
AMCG00018110 mRNA upstream 48574 2032723 ~ 2046992 (-) True AMCG00018110
AMCG00018109 mRNA upstream 83497 2067646 ~ 2068026 (-) True AMCG00018109
AMCG00018112 mRNA upstream 88404 2072553 ~ 2081057 (-) True AMCG00018112
TU142989 other downstream 1056913 923507 ~ 926739 (-) False AMCG00018077
TU142990 other downstream 1056913 923507 ~ 926739 (-) False AMCG00018077
TU142760 other downstream 1541228 441085 ~ 442424 (-) True G114021
TU143224 other upstream 1000 1985149 ~ 2006636 (-) False AMCG00018113
TU143230 other upstream 22757 2006906 ~ 2067584 (-) False AMCG00018111
TU143313 other upstream 297551 2281700 ~ 2288862 (-) True G114430
TU143456 other upstream 624996 2609145 ~ 2609479 (-) True G114549
TU143816 other upstream 2076662 4060811 ~ 4064248 (-) False G114838

Expression Profile