RNA id: TU143345


Basic Information

Item Value
RNA id TU143345
length 1958
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id G114456
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 2368430 ~ 2375735 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCAGAATTAGCTTCTAAATACAGAGCCAATTAAAACTACAACACGTGGGCACATCACCACACAGATCCTGTTTTTTTGAGGCTAATCAGCTTAATTGCTATCAatataatgctttttaaatgttcccagcGCACGACGATGACTGAGCACAGAACTAAGCAGAGCAGTTAAACCAACGGGGCAACTCTCAGTGAGGAGGAAACAGAAGCTAATGCAATGAAGGCACGCATGACCCCGAGGGCGCAGGGAAGGTCGTCACCATGCTACCGAAGACGCCGGGGCAAGTAATCCGACTGACTAATCCCGAGACCCGGGAAGACGGGAGGAAGGAAAGACCAAGGCAGAAGTTCCACAGGAGTCCCTGACCCCACGGTCCAGGAGAGAGACCCCAGGAGCTGTTTAACCCTCAGAGTGCCAACATCACGGCGAACGCGCTATTCGACAGGATGACAGCGGCCTCGCACCACCGAGAGTGCTGGGTTTCTCCCATTTCAAGACACATAGTGACCATATAGAACCTATACATCACAAGAAACGTAAGACATGGAAGTTTTTCgttctattaatttatttttgggttGAATATAGAAATGTGCATTTGGCAAGGAAACTCATGTTATACAGAAGgcatttttattctcaaaacatccattattttcaaaatcaaccatgcacacaaacacttcaAACATCATACATTCGATTCCCCAGCATGtcgttttaaatacaaaaatccacAGATGATTACAAACAGCTATTGAAAAGATATCAATTTTGCAAAGCAGCGTAAACCACCCAGAAACGTGCTTGCCTGCAAAAGCCATTTCTTCCTTTAATTGCTCAATACGCAACACAaccattttacatttgcttCATTGTCACTCAATCATACACATTTTACTGCAACAGAAGTGATTTGCACTAGAGAAAATTTCATCTAAAGTCATTTAAGTCAATGCGAATAGTCGTTAAGTAGAAAAGCATCTGCAAATATACCTATAATTAACAACAAACTTACATTCCTGCACTTTTCATGATTTCAAACCCGTGCGTTCCCCTCGTTGCAGACCTCCACTGAACACAACCGCTCACAGACGTGGGCAGCTCAGCTGCGTGGGACACATCAAGACACCGAAATTTGGGTCGACCGTCCGCATTAAAGGAACGTCTTCGTCTGTACTCCCCTGATGTCTACttcctcctcttcatcctcctcttccagaTCGCTGTCATCACTGTCTACACTAGACCTGCCTCAAAAGCTGTACAATGTATAAAAATCTACAGCCATTCCCCGGCTGTCTAGTTCTTGCGCTGCCCGGTAGTACTCTGAGGGTTAAATAAAACCGATTGAGACGTACTGCCCTGCAACTAATGTTCAGCTCACACAAACGAGGATTTATTGAACTACTGTGCTGTTGCTAGCTGCTTCTTTTTATGACTTTCTGGATAAATTACGACAGCAGGTTTTTACGTcaaattaaatccattaaaaGCGCATTTACTACATATGCAGAGCAGTTTATAATTCAGCACTGGAGGAATCTCAGACACTTGAAAGATGGTGAGTAAGCAACACTGTGGCAGCGACACTGATGCACTGTTTGGCCACAAGGGGGTCGTTGAGTTGTGAATATTTAGGATTGATAACTTCTTAGACTACATGTACAAGGGATGGAAATCAGTACGAACTCCACTGAGGAACGGAGAGCAAAACGCAGTAACTGGATGCCTCAGATTATGtgcattgtgttatttttttggttaatCTGAACCTTTGGTGCATTTAGACaaacaaagaggaaaacaaaatcttgaCATTTTTAATAGAGTTGAGTGATTTTAGCTGCAGGTGCATCTTGGGAGGGGTTTCGGACATCAGCAGGGAGAAATACCTTGAGAAACTTGCATGCGATTCATATGTTGATTTGGCACATTGGAAATAGGCATAGGTCCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143220 lncRNA downstream 382709 1985149 ~ 1985721 (-) False AMCG00018113
TU143216 lncRNA downstream 384281 1983652 ~ 1984149 (-) True G114363
TU143140 lncRNA downstream 490055 1842143 ~ 1878375 (-) False G114304
TU143139 lncRNA downstream 521659 1751896 ~ 1846771 (-) True G114304
TU143110 lncRNA downstream 833445 1533456 ~ 1534985 (-) True G114286
TU143460 lncRNA upstream 260766 2636501 ~ 2647811 (-) False AMCG00018142
TU143462 lncRNA upstream 292725 2668460 ~ 2668661 (-) True G114554
TU143599 lncRNA upstream 620300 2996035 ~ 2998258 (-) True G114658
TU143625 lncRNA upstream 701306 3077041 ~ 3077760 (-) True G114681
TU143670 lncRNA upstream 764360 3140095 ~ 3141310 (-) True G114720
AMCG00018122 mRNA downstream 147729 2214872 ~ 2220701 (-) True AMCG00018122
AMCG00018123 mRNA downstream 158867 2203377 ~ 2209563 (-) True AMCG00018123
AMCG00018117 mRNA downstream 206048 2160400 ~ 2162382 (-) True AMCG00018117
AMCG00018118 mRNA downstream 257763 2105605 ~ 2110667 (-) True AMCG00018118
AMCG00018112 mRNA downstream 287373 2072553 ~ 2081057 (-) True AMCG00018112
AMCG00018137 mRNA upstream 26563 2402298 ~ 2408795 (-) True AMCG00018137
AMCG00018135 mRNA upstream 35283 2411018 ~ 2420035 (-) True AMCG00018135
AMCG00018134 mRNA upstream 67972 2443707 ~ 2449697 (-) True AMCG00018134
AMCG00018136 mRNA upstream 90968 2466703 ~ 2476255 (-) True AMCG00018136
AMCG00018140 mRNA upstream 117332 2493067 ~ 2497418 (-) True AMCG00018140
TU143313 other downstream 79568 2281700 ~ 2288862 (-) True G114430
TU143230 other downstream 300846 2006906 ~ 2067584 (-) False AMCG00018111
TU143224 other downstream 361794 1985149 ~ 2006636 (-) False AMCG00018113
TU142989 other downstream 1441691 923507 ~ 926739 (-) False AMCG00018077
TU142990 other downstream 1441691 923507 ~ 926739 (-) False AMCG00018077
TU143456 other upstream 233410 2609145 ~ 2609479 (-) True G114549
TU143816 other upstream 1685076 4060811 ~ 4064248 (-) False G114838
TU144050 other upstream 2210327 4586062 ~ 4588297 (-) True G115020
TU144068 other upstream 2270842 4646577 ~ 4651612 (-) False AMCG00018220
TU144242 other upstream 2910651 5286386 ~ 5287873 (-) True G115174

Expression Profile