RNA id: TU143377


Basic Information

Item Value
RNA id TU143377
length 2293
lncRNA type inter_gene
GC content 0.51
exon number 2
gene id G114484
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 2410477 ~ 2412789 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTGCAGCGCCATGTCAGTTTACCCTTCAAAGCAGCACAGTGGCTCCGATGAATGTACTtctcacactgcactgcaggaAATAAGGGATTAAACATTGACCAGTGCCTTATCACAGCGTCGGCTCACAGGGATGCCCCTCCCAGGTGGGAATTTGGTGGGAATGCCAAAGAACGGGTGCAAAGAACTGTTAATTTTGGCATGTCAGGCATCAGTATTTTCTGCATGGATTGGTTTGGTTTGGAGGAAATGTGAAACTTGGCCCTGTGTGTCAAACCCGACCCAGTGGATCAGAGCGAGACGATCGGTAAGGTACAGAAAACTCTCACACAAGACatgttgtttgaaatatttttattttaaatcgtTATAACACaccctgtttttttgtttgtttttttagtggaacacatttctcttaaaatgtaaaatgctccTGTTTGCAGCTTTTAAGACATTAAACGTTAGCTGCAGGTGTCAGTTTCCTGCCATTCGATTTCCTGAAGTGttactgggggggNNNNTTTACATTGTAGAAGGAAGAATTCTCTCCGTGTGCGATTTAAAAGGCTGCAGTTGAGATCTGACCAGATGTTCCTCTGAACACATTGTGAGAGCCCACTGTTCTTCATGAGAACATGGCAGGCAAAGTCGGAAACAAGCGCACATTGCGGTGTGTAATCAGAGAGTTTGATGTTTAATGGTCCCGTAACTGGAACTTTATTGTAGGAATTATTGTTGTGGTGTGGCGATCTGGATTGAGAGTTCACGGTTATGACGGACTGAGGAAACAAAGTCATTCCTCCACTACAGCAGCACAGATAGTACATCCTTCCAGACCAGAGATGCTGGTCGTTGACAGTATTGTAATAAACGGGATCAGTGTTAATTCGAGTAGCTCTCTCGTTCCCACAGTAGGGCGATGATGTCGGGCTACTTCTCTCGCTGAACCAGGTTTGGAGAGGGGGCTCAGCAAAGGACCCTGGCTGGGAAGTCGTTTCTGGCCTGTTCATTAAACATGGCGTTTGAATTGAACTTCTCTCCTCAACCCTGTGGAGATGCCGGAGGACAGGGCTGCATACTCCTGTCAACACAATGGGGGTCTTGCTGGGGGCCAGACAGGTCTGTGGAGTAGCTCCCCCCAACCCAACATGACAGCTGAAACTCTCTTTAAAAAGCAGTCAACATACGCAGTGCTGACCTTGATGGGTTTCGAAAACCGCTCAGGAACCGTGAGGACACTGAAGTAGACTGGCCATTGTCGAGCggtttgaaaacaaaccaaaccaaaccaaaataaacacctCGCTGTCAGCCTGAAAATGAGCATCCCGTGTCAGAGCCCTGTCCCCTCGCTGGGTCTGCCCAGCGGTGCCCAACCTGGGCAGACACacgggaaaaaaaagatttatgcCGGATCTTGAACATTTAAATCTGCTGAATTGCAGAAGAGAAGCACATCCAGCAGAGGTTATTAAATCCATCCTGCCTTTAAgataaatagaaacaaaaataagtcatTTCTGCCCCCCGGAGGCGGCGCTGTGTTGGTGTTGGATCAGCTGTggctgtgtctgtgcagtgcGGAGATCCTCTGTGGCGTTTTACAGCGGGACAGGCGCTGTGGACGCCAGTGCACGCCGCTCACAGCAGGAACGATTGGTCTCCGTGCGTTCAGGGCCAATATTTTTCTCCTGAGCATTTAAAGATGCGCATCAGACACAGCAGCCAGCCTTCACAGTTCAGTATTTTCCATGCCACCCAGAGATGAGCGAACACCCCCCGTAGTGTGGGTTCTGAGGGGGGAGGTTAATCACAGTCCACACATGTGGTAGGCACCTAAATCGAAAACAAAGTGCAGCGCTGCGCCCGAGTCGCAAAACGGTGTTGCGCTTATAGGCCTATCCCCACCCCCGGGCTCTGTAGCGGGGTGTTCTGGAATCCCTGGGTGTTCTGGAACGGTGCAGTGGAGGGGTTTCTACAGGGGCTGAGCTGCAGATGGAGAGGCTGTGCGAGTTCTGCGCTCTCTGTCTAGCAGcagggaggaaggggaggacaggagagagggacaggcTAGGGTCCGGGGCAGTGGGGGTCCGGTCTGTGTGCGGGGGGTGTGTCTCCAGTCTGCTGTGTTCCTGTGTGGGACGGCTGTGTGTTCAGTAATGGGGCTCACAGTCCTCCACCAGGCTGTCAGTGATGTAGCTGATGCCCAGCACTTCCTGGTAAAACTGCTTCTCCACAGATGTGTTGATGGTCCAGGCCACCACCTCCACGCTCCGCTCTGCCCAGTACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143296 lncRNA upstream 143726 2262676 ~ 2266751 (+) False AMCG00018119
TU143212 lncRNA upstream 360300 2048571 ~ 2050177 (+) True G114359
TU143197 lncRNA upstream 388847 2006906 ~ 2021630 (+) True G114346
TU143178 lncRNA upstream 426327 1983651 ~ 1984150 (+) True G114332
TU143166 lncRNA upstream 436794 1972926 ~ 1973683 (+) False AMCG00018105
TU143378 lncRNA downstream 4018 2416807 ~ 2417796 (+) True G114485
TU143420 lncRNA downstream 78524 2491313 ~ 2568938 (+) False G114518
TU143435 lncRNA downstream 160848 2573637 ~ 2573867 (+) True G114531
TU143455 lncRNA downstream 196354 2609143 ~ 2609412 (+) True G114548
TU143461 lncRNA downstream 255671 2668460 ~ 2668661 (+) True G114553
AMCG00018128 mRNA upstream 9068 2393305 ~ 2401409 (+) True AMCG00018128
AMCG00018129 mRNA upstream 18479 2385300 ~ 2391998 (+) True AMCG00018129
AMCG00018126 mRNA upstream 28390 2356277 ~ 2382087 (+) True AMCG00018126
AMCG00018127 mRNA upstream 76446 2328704 ~ 2334031 (+) True AMCG00018127
AMCG00018125 mRNA upstream 105033 2302964 ~ 2305444 (+) True AMCG00018125
AMCG00018131 mRNA downstream 8476 2421265 ~ 2432982 (+) True AMCG00018131
AMCG00018133 mRNA downstream 20609 2433398 ~ 2433656 (+) True AMCG00018133
AMCG00018130 mRNA downstream 21667 2434456 ~ 2443528 (+) True AMCG00018130
AMCG00018132 mRNA downstream 37000 2449789 ~ 2464758 (+) True AMCG00018132
AMCG00018138 mRNA downstream 161606 2574395 ~ 2579357 (+) True AMCG00018138
TU143173 other upstream 430098 1979046 ~ 1980379 (+) False AMCG00018106
TU143174 other upstream 430098 1979046 ~ 1980379 (+) False AMCG00018106
TU143175 other upstream 430098 1979046 ~ 1980379 (+) False AMCG00018106
TU143176 other upstream 430098 1979046 ~ 1980379 (+) False AMCG00018106
TU143170 other upstream 431750 1977004 ~ 1978727 (+) True G114330
TU143421 other downstream 153295 2566084 ~ 2567535 (+) True G114518
TU143458 other downstream 228057 2640846 ~ 2647774 (+) True G114551
TU143856 other downstream 1778928 4191717 ~ 4193114 (+) False AMCG00018196
TU144009 other downstream 2188701 4601490 ~ 4603989 (+) False AMCG00018216
TU144084 other downstream 2348729 4761518 ~ 4763905 (+) True G115049

Expression Profile