RNA id: TU143456


Basic Information

Item Value
RNA id TU143456
length 335
RNA type TUCP
GC content 0.52
exon number 1
gene id G114549
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 2609145 ~ 2609479 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

agtgaagcatggtggtggcagcatcatgctgtggggatgttttgcAGTGGCAGGAACTGGAAGACTAGTcgggatcgagggaaagatgaatgcagcaatgtacagagacatccttgatgaaaacctgctccagagcgctctggacctcagactggggcgaaggttcatcttccaacaggacaacgaccctaagcacacagccaagataacaaaggagtggctacaggacaactctgtgaatgtccttgagtggcccagccagagcccagacttgaacccgattgaacatctctggagagatctgaaaatggctgtgcaccgatgctccccatcca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143345 lncRNA downstream 233410 2368430 ~ 2375735 (-) True G114456
TU143220 lncRNA downstream 623424 1985149 ~ 1985721 (-) False AMCG00018113
TU143216 lncRNA downstream 624996 1983652 ~ 1984149 (-) True G114363
TU143140 lncRNA downstream 730770 1842143 ~ 1878375 (-) False G114304
TU143139 lncRNA downstream 762374 1751896 ~ 1846771 (-) True G114304
TU143460 lncRNA upstream 27022 2636501 ~ 2647811 (-) False AMCG00018142
TU143462 lncRNA upstream 58981 2668460 ~ 2668661 (-) True G114554
TU143599 lncRNA upstream 386556 2996035 ~ 2998258 (-) True G114658
TU143625 lncRNA upstream 467562 3077041 ~ 3077760 (-) True G114681
TU143670 lncRNA upstream 530616 3140095 ~ 3141310 (-) True G114720
AMCG00018141 mRNA downstream 37197 2566291 ~ 2571948 (-) True AMCG00018141
AMCG00018139 mRNA downstream 91688 2515317 ~ 2517457 (-) True AMCG00018139
AMCG00018140 mRNA downstream 111727 2493067 ~ 2497418 (-) True AMCG00018140
AMCG00018136 mRNA downstream 132890 2466703 ~ 2476255 (-) True AMCG00018136
AMCG00018134 mRNA downstream 159448 2443707 ~ 2449697 (-) True AMCG00018134
AMCG00018142 mRNA upstream 27022 2636501 ~ 2647717 (-) True AMCG00018142
AMCG00018143 mRNA upstream 64018 2673497 ~ 2674351 (-) True AMCG00018143
AMCG00018147 mRNA upstream 142470 2751949 ~ 2783012 (-) True AMCG00018147
AMCG00018151 mRNA upstream 222577 2832056 ~ 2838291 (-) True AMCG00018151
AMCG00018152 mRNA upstream 230283 2839762 ~ 2847976 (-) True AMCG00018152
TU143313 other downstream 320283 2281700 ~ 2288862 (-) True G114430
TU143230 other downstream 541561 2006906 ~ 2067584 (-) False AMCG00018111
TU143224 other downstream 602509 1985149 ~ 2006636 (-) False AMCG00018113
TU142989 other downstream 1682406 923507 ~ 926739 (-) False AMCG00018077
TU142990 other downstream 1682406 923507 ~ 926739 (-) False AMCG00018077
TU143816 other upstream 1451332 4060811 ~ 4064248 (-) False G114838
TU144050 other upstream 1976583 4586062 ~ 4588297 (-) True G115020
TU144068 other upstream 2037098 4646577 ~ 4651612 (-) False AMCG00018220
TU144242 other upstream 2676907 5286386 ~ 5287873 (-) True G115174
TU144251 other upstream 2690628 5300107 ~ 5304429 (-) True G115183

Expression Profile