RNA id: TU143463


Basic Information

Item Value
RNA id TU143463
length 1224
lncRNA type read_through
GC content 0.32
exon number 2
gene id G114555
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 2670907 ~ 2742686 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAGGCATTTCAAACTCAATGTTTCAAAAGGAAATTTAACCATTTTGGACGCCATTTCACCTGCTCTTATCTGATCTTATTTTATCTTTCGGTCTCATCAGGATAATAAGGCAGGATCATTCTGGCAATCATTGCTTTATACAGAAGACAAAAGATAACTGTTGATATGTTGTTTCGGGCTGGTGTGTTATAGTGAACAGTGCAGAGATGGGTAGTAGTGTTCAGATTAAACCACATGACTGTATGTCACAGATACAAAGGACCTCAGAAAATTTGAACAGTTTGTTTTACCtcacaatttataataatattaataataggaGAAACACATTCTTGTATCCAATCTccaaatatgtataaatgtgaaatgtgaaataacaaaatgtacttGCTGGAATGTGCACAATCATTGTgcataaagtatttaaaacaaccATTGTTTACTTAAACACAGTAAGTATTTATAATGAGGCTATAAGCATCATAAAATGAAGTTTCGgttatgtttgtgttgtgtcaATTATGTCTcggtaaattattaatttgaaagaaGGAAGAATTTGTTGGGATTCCTATTGTTTTAACACAGACCGTTCAGAGAGATgcattctcattttattttatttttaagattattttagaGGTTCAAAAGTCAATGATGGGGAGAACAGATCAGCCAATGTGATATTACACTAAAATATAATAGTATGAtacaatagagagagagagatgttagATTACATGCAGAAGGCTGCCGAATTTGACCTAGTCTTAATGTATTgccatgaaatacattttattaatcgAACTGGAACTTTATCATTTTGAACAATGTGCTGCAAATGGGTAATAAGATAACTTGACTACAATCAATACCTGAGTTTGCACACCATTAAATCTATTAAGTATATCTTTACTTGTAAAATAACATATGGTAGTGAAGACATTTATGGGAATGAATGCTTGACTACAATCTTTCCCCACGTGAGTAGAAAGACACTtgactgttttttgttccaactgagcttaattaagtaacaatctgcttagattttacttttaaaagcgtgtaataaaagagttggttctttaataagttatttatacaaatttATACTTACCTTACAACCCCtttaaggaaattattagttcaattaagggttcaattaagtaattgagagctcagttggaacaaaaaccagcagggtagggggtactccaggac

Function

GO: NA

KEGG:

id description
ko04614 Renin-angiotensin system
ko04976 Bile secretion
ko04975 Fat digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143461 lncRNA upstream 2246 2668460 ~ 2668661 (+) True G114553
TU143455 lncRNA upstream 61495 2609143 ~ 2609412 (+) True G114548
TU143435 lncRNA upstream 97040 2573637 ~ 2573867 (+) True G114531
TU143420 lncRNA upstream 101969 2491313 ~ 2568938 (+) False G114518
TU143378 lncRNA upstream 253111 2416807 ~ 2417796 (+) True G114485
TU143537 lncRNA downstream 101619 2844305 ~ 2845453 (+) True G114613
TU143550 lncRNA downstream 122302 2864988 ~ 2867237 (+) True G114624
TU143562 lncRNA downstream 139746 2882432 ~ 2882968 (+) True G114629
TU143616 lncRNA downstream 359480 3102166 ~ 3103170 (+) True G114674
TU143647 lncRNA downstream 425477 3168163 ~ 3168982 (+) True G114699
AMCG00018138 mRNA upstream 91550 2574395 ~ 2579357 (+) True AMCG00018138
AMCG00018132 mRNA upstream 206149 2449789 ~ 2464758 (+) True AMCG00018132
AMCG00018130 mRNA upstream 227379 2434456 ~ 2443528 (+) True AMCG00018130
AMCG00018133 mRNA upstream 237251 2433398 ~ 2433656 (+) True AMCG00018133
AMCG00018131 mRNA upstream 237925 2421265 ~ 2432982 (+) True AMCG00018131
AMCG00018144 mRNA downstream 40376 2783062 ~ 2786522 (+) True AMCG00018144
AMCG00018149 mRNA downstream 45687 2788373 ~ 2793873 (+) True AMCG00018149
AMCG00018150 mRNA downstream 71761 2814447 ~ 2827770 (+) True AMCG00018150
AMCG00018148 mRNA downstream 136882 2879568 ~ 2881846 (+) True AMCG00018148
AMCG00018155 mRNA downstream 168935 2911621 ~ 2915341 (+) True AMCG00018155
TU143458 other upstream 23133 2640846 ~ 2647774 (+) True G114551
TU143421 other upstream 103372 2566084 ~ 2567535 (+) True G114518
TU143174 other upstream 690528 1979046 ~ 1980379 (+) False AMCG00018106
TU143856 other downstream 1449031 4191717 ~ 4193114 (+) False AMCG00018196
TU144009 other downstream 1858804 4601490 ~ 4603989 (+) False AMCG00018216
TU144084 other downstream 2018832 4761518 ~ 4763905 (+) True G115049
TU144414 other downstream 3206777 5949463 ~ 5951017 (+) True G115299
TU144781 other downstream 5150941 7893627 ~ 7894449 (+) True G115590

Expression Profile