RNA id: TU143537



Basic Information


Item Value
RNA id TU143537
length 726
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G114613
representative True

Chromosome Information


Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 2844305 ~ 2845453 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GGACCGCCTGAGCCACAAACATGTCGACCTCGCTGCGGTACCCCCGGGAGGCCGAGTACTCCACCAGCATCTTGGCACAGCCCTCCCCGTCAGAGGAGTGCAGGAAGTGGTAGCGAGACTCACTGTAGTTTTGCTCTGGGCGGCCAAATcgacaacaacacacaacacacagaaagacagagtgGTTATTCCTTTGGGCTGACATTGTCCTCGTgttatagtttgtttgttagtttgtgtgtgtgtgttctggcccgGGCCGTACCTTTCCATAGTGTGACTGCGAGGAGCTGGTGCAGCTTGGGATGGCCCAGTTTGCCCGATCCACCACTGGACCACTTAAGTGCTCTGGAGACGAAGGCTACTCTCTCTGGGGAGTTGGGATCCATCTGGCTAAACAGCTTTGCCAAGTGTTCTGCTAAATTTCATCTACTACTTTGGTGTCTGACTTCTCCAGGGACTCCAGCACCAGCATGGACAGATCTGCAGCGCTGTTTTGCTGTGAAAGGAGATTGTACATGTAGTTCCTATTTGATGAATGCATGCAAATTGTACCTCCATTGTATGGCAATAGTGTAACTGAACTCCTAACAGCTTTATTGCTAATATGGAAGGGAAAGTCAGGGTGTGAaaccaattcaattatttaagtCACTCTCAGCTGGGAGTTTGTGTGCAGCTGTTTTCAATGAACTTGAAAGGGTTTTTATTAGGATTCAATTAAAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU143463 lncRNA upstream 101619 2670907 ~ 2742686 (+) True G114555
TU143461 lncRNA upstream 175644 2668460 ~ 2668661 (+) True G114553
TU143455 lncRNA upstream 234893 2609143 ~ 2609412 (+) True G114548
TU143435 lncRNA upstream 270438 2573637 ~ 2573867 (+) True G114531
TU143420 lncRNA upstream 275367 2491313 ~ 2568938 (+) False G114518
TU143550 lncRNA downstream 19535 2864988 ~ 2867237 (+) True G114624
TU143562 lncRNA downstream 36979 2882432 ~ 2882968 (+) True G114629
TU143616 lncRNA downstream 256713 3102166 ~ 3103170 (+) True G114674
TU143647 lncRNA downstream 322710 3168163 ~ 3168982 (+) True G114699
TU143648 lncRNA downstream 322710 3168163 ~ 3168826 (+) False G114699
AMCG00018150 mRNA upstream 16535 2814447 ~ 2827770 (+) True AMCG00018150
AMCG00018149 mRNA upstream 50432 2788373 ~ 2793873 (+) True AMCG00018149
AMCG00018144 mRNA upstream 57783 2783062 ~ 2786522 (+) True AMCG00018144
AMCG00018145 mRNA upstream 96912 2717502 ~ 2747393 (+) True AMCG00018145
AMCG00018146 mRNA upstream 126868 2698828 ~ 2717437 (+) True AMCG00018146
AMCG00018148 mRNA downstream 34115 2879568 ~ 2881846 (+) True AMCG00018148
AMCG00018155 mRNA downstream 66168 2911621 ~ 2915341 (+) True AMCG00018155
AMCG00018156 mRNA downstream 79962 2925415 ~ 2934755 (+) True AMCG00018156
AMCG00018163 mRNA downstream 101981 2947434 ~ 2948696 (+) True AMCG00018163
AMCG00018158 mRNA downstream 104438 2949891 ~ 2965319 (+) True AMCG00018158
TU143458 other upstream 196531 2640846 ~ 2647774 (+) True G114551
TU143421 other upstream 276770 2566084 ~ 2567535 (+) True G114518
TU143174 other upstream 863926 1979046 ~ 1980379 (+) False AMCG00018106
TU143856 other downstream 1346264 4191717 ~ 4193114 (+) False AMCG00018196
TU144009 other downstream 1756037 4601490 ~ 4603989 (+) False AMCG00018216
TU144084 other downstream 1916065 4761518 ~ 4763905 (+) True G115049
TU144414 other downstream 3104010 5949463 ~ 5951017 (+) True G115299
TU144781 other downstream 5048174 7893627 ~ 7894449 (+) True G115590

Expression Profile