RNA id: TU143599


Basic Information

Item Value
RNA id TU143599
length 2203
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G114658
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 2996035 ~ 2998258 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atatttttgtataaagtttaataaagcagaaatatatttattgaaaccataaatatataaattatttgttcTTCCAACTAGCCCCGAAAAACTTGTGGGACATGTGGCACGTTTACGGTGGAGATGGTCCCAGAGTTCGGCTGATGGCTGGGAGAAGGTCGGGGCTGGAGCCCAGGTCATGGACTGGCAGGCTGTGAAcacttcttttaaaaatatatatatatatatatatatatatatatatagcaccgattacaatgttttctttgaagATCTGACCTACAAAAAGGAAAGCAGCAGTTTTCACTTTAAATAACATAGCAGCAGGACTATCACgtagaaaagaaacacacatactTTGAAGACATTCCCTTATCTCGCTGTTTTCACCTCCCGGACAAATTCAAATTGAGGGTCCAATGGACAGGTTTTGGAAATGCTTACATCAGACATGAGACTAAGTGCATTTTATTCCTACAACATGAGGAAGGTGGTAAGGGGGTCTTTAACCTCCATCTCTTCAAAGGAGTTTCAGTCACCAAGGACCCCTGTATATGTTCTCTGATCTTTGTATACAAGGCCGCCCTCCGCTATTGTTTCTTGTAGAACTAAACTGCACTGATGCTGTTGAAGTTAATGTTACTTTAGTTGTAATCTGATGGAGAGTAGCTATTGCtgatttgtaaaatgcataaattTACACGACAAACCATATAATCAGACAAAGAAATAGCTGTGCTAGGGTCTGTTTACTTGCATACAATATCTGAACAATTTCTCAGTGTGAGTCAACAGAGCAGGGTCTGAAACTCAAAGGTTGTCTGTGTGTTACAAGTCATATTTAACTCTCAGAATTGAAACTGAATGAAAAGAAAGTTAACTGAAACTTTTAAAAGAAGCAACATTAAGTTAAGAAGAGCATTACAATAGTTCACTGGttgtttgaaacaaaaaaaaagttacaaatacaaacattccaacacaacaaaagaaaatatttcttgATGAATATACGTAAGCTTAATATTTTACCAAAAATAAAGgatttccccccctcccccatcttTTCTTTCAGATATTTGCAGCCACGTTTCTGTCACTACCATTTTTCTTACACTGAACAAAGCAGCTATTCAGAAATagattggttttattattattattattattattattattattattattattattatttcacaccAGCTGCACGTGTGAAATAGTTCCaatacaatggaaaaataataactaataatgagaggaacacaaaacacacaagggATAACAGTTCATCGATATTCCTACAGAACATGGTGAAATAAAGGAAGAACCACAATAAAAGTCTTTGATTTTGTCCTGTAAACTTATTCAATTTGAATGCCGTGGttaatattgaaagaaaataaacgtCCAGGTGTATAAATAGTTTATAACTAGACTGGGCGAGTTGCAATTACTGCAGTTGGATGCTCaacttttcttttgcatttatgtAAGTTgtccactgcaaaacaaaaaaaggttagAAGAGGTTAAAAGAAAGAGGTTGTTTTAAAAGATCCTTGACGTTTGAAACAAAATCAGCTCTCTCTTTAAGGGTTCCCATGAAGAAAGGACTTTAAACTACTGGGCAAGAATGTTCCTCAGCAGCTCTCCAGATCCCAAATGGCTTTTATCCACCTCGCCTTCATTGGCACGAAGTCCATTAATGTCCGTCAGAAAGCAGCACGGATTTTGAGCACAAAGCGCCCCCGACCCCTTCAGCATCACCCCTTTATTCCCTTCAGACGCCTCTCCTCTCCGTGTACGGCCTCAGCGCACTGCTCTTTTCACCGCCTGTCCGGAGAGAGAACGGTGGCATAGTCCCAGAAGACTGCGATTATCCATTCCTTTCTTTTGGTTTCTGTccgtttttattatttcactttgcaataccaaaaaaaagagGGCGAAAGAAAGGCACACATTGTTCTCTCTCGGCCCCTCAGCTGTCTTGTATACCTGCCAGCAGTGCTGTTGCTATTGAAATGAAGCGACCGGTTTCACATTTCGGAACAAGTTCCCGTCATTGTgaggaagcacctttggcattCTTGTGGTTGTTGCTTTTGTAGTCGTCGTTGGTTTGGTTGTTGGTCAGGGAGTCTGGAGAGACGGCTGCTTCCCTCCCCGAGGCAGTAGTCCTTCCTTAGGCAATTTTCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143462 lncRNA downstream 327374 2668460 ~ 2668661 (-) True G114554
TU143460 lncRNA downstream 348224 2636501 ~ 2647811 (-) False AMCG00018142
TU143345 lncRNA downstream 620300 2368430 ~ 2375735 (-) True G114456
TU143220 lncRNA downstream 1010314 1985149 ~ 1985721 (-) False AMCG00018113
TU143216 lncRNA downstream 1011886 1983652 ~ 1984149 (-) True G114363
TU143625 lncRNA upstream 78783 3077041 ~ 3077760 (-) True G114681
TU143670 lncRNA upstream 141837 3140095 ~ 3141310 (-) True G114720
TU143693 lncRNA upstream 402174 3400432 ~ 3401938 (-) True G114739
TU143753 lncRNA upstream 909761 3908019 ~ 3910399 (-) True G114785
TU143815 lncRNA upstream 1029758 4028016 ~ 4064248 (-) True G114838
AMCG00018157 mRNA downstream 87606 2882488 ~ 2908429 (-) True AMCG00018157
AMCG00018154 mRNA downstream 120574 2871453 ~ 2875461 (-) True AMCG00018154
AMCG00018153 mRNA downstream 126668 2851429 ~ 2869367 (-) True AMCG00018153
AMCG00018152 mRNA downstream 148059 2839762 ~ 2847976 (-) True AMCG00018152
AMCG00018151 mRNA downstream 157744 2832056 ~ 2838291 (-) True AMCG00018151
AMCG00018160 mRNA upstream 59797 3058055 ~ 3060305 (-) True AMCG00018160
AMCG00018161 mRNA upstream 63355 3061613 ~ 3068554 (-) True AMCG00018161
AMCG00018162 mRNA upstream 74931 3073189 ~ 3075636 (-) True AMCG00018162
AMCG00018168 mRNA upstream 101472 3099730 ~ 3103442 (-) True AMCG00018168
AMCG00018167 mRNA upstream 144216 3142474 ~ 3150456 (-) True AMCG00018167
TU143456 other downstream 386556 2609145 ~ 2609479 (-) True G114549
TU143313 other downstream 707173 2281700 ~ 2288862 (-) True G114430
TU143230 other downstream 928451 2006906 ~ 2067584 (-) False AMCG00018111
TU143224 other downstream 989399 1985149 ~ 2006636 (-) False AMCG00018113
TU142990 other downstream 2069296 923507 ~ 926739 (-) False AMCG00018077
TU143816 other upstream 1062553 4060811 ~ 4064248 (-) False G114838
TU144050 other upstream 1587804 4586062 ~ 4588297 (-) True G115020
TU144068 other upstream 1648319 4646577 ~ 4651612 (-) False AMCG00018220
TU144242 other upstream 2288128 5286386 ~ 5287873 (-) True G115174
TU144251 other upstream 2301849 5300107 ~ 5304429 (-) True G115183

Expression Profile