RNA id: TU143625


Basic Information

Item Value
RNA id TU143625
length 284
lncRNA type inter_gene
GC content 0.48
exon number 4
gene id G114681
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 3077041 ~ 3077760 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGTGCGATGCATCTCCTGTTAATGAGAGTGCCCTGTGTGCCGGAGTTAACAGCAGCGTCATTAACAAGTCCCTGGAAATCGCCGATTTCTCCAATGCACTGTGCGACTTCAGCATTGACGAGTATGCCTGCTCTTCGGTGGCAAACTTAAACGCAGCCAACTTGGTCACCCTTCTGAACTGCACAGCTCACAACAAGATGAACTTCACCAAAGATTCCTTAAAGTTGTTCCTCAGCAAAGTCTCAGGAATACTGGATGCAGCTCTGGATACCTATCCTAACATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143599 lncRNA downstream 78783 2996035 ~ 2998258 (-) True G114658
TU143462 lncRNA downstream 408380 2668460 ~ 2668661 (-) True G114554
TU143460 lncRNA downstream 429230 2636501 ~ 2647811 (-) False AMCG00018142
TU143345 lncRNA downstream 701306 2368430 ~ 2375735 (-) True G114456
TU143220 lncRNA downstream 1091320 1985149 ~ 1985721 (-) False AMCG00018113
TU143670 lncRNA upstream 62335 3140095 ~ 3141310 (-) True G114720
TU143693 lncRNA upstream 322672 3400432 ~ 3401938 (-) True G114739
TU143753 lncRNA upstream 830259 3908019 ~ 3910399 (-) True G114785
TU143815 lncRNA upstream 950256 4028016 ~ 4064248 (-) True G114838
TU143819 lncRNA upstream 950256 4028016 ~ 4087031 (-) False G114838
AMCG00018162 mRNA downstream 1405 3073189 ~ 3075636 (-) True AMCG00018162
AMCG00018161 mRNA downstream 8487 3061613 ~ 3068554 (-) True AMCG00018161
AMCG00018160 mRNA downstream 16736 3058055 ~ 3060305 (-) True AMCG00018160
AMCG00018157 mRNA downstream 168612 2882488 ~ 2908429 (-) True AMCG00018157
AMCG00018154 mRNA downstream 201580 2871453 ~ 2875461 (-) True AMCG00018154
AMCG00018168 mRNA upstream 21970 3099730 ~ 3103442 (-) True AMCG00018168
AMCG00018167 mRNA upstream 64714 3142474 ~ 3150456 (-) True AMCG00018167
AMCG00018169 mRNA upstream 83471 3161231 ~ 3167163 (-) True AMCG00018169
AMCG00018170 mRNA upstream 321533 3399293 ~ 3399919 (-) True AMCG00018170
AMCG00018171 mRNA upstream 403948 3481708 ~ 3483903 (-) True AMCG00018171
TU143456 other downstream 467562 2609145 ~ 2609479 (-) True G114549
TU143313 other downstream 788179 2281700 ~ 2288862 (-) True G114430
TU143230 other downstream 1009457 2006906 ~ 2067584 (-) False AMCG00018111
TU143224 other downstream 1070405 1985149 ~ 2006636 (-) False AMCG00018113
TU142990 other downstream 2150302 923507 ~ 926739 (-) False AMCG00018077
TU143816 other upstream 983051 4060811 ~ 4064248 (-) False G114838
TU144050 other upstream 1508302 4586062 ~ 4588297 (-) True G115020
TU144068 other upstream 1568817 4646577 ~ 4651612 (-) False AMCG00018220
TU144242 other upstream 2208626 5286386 ~ 5287873 (-) True G115174
TU144251 other upstream 2222347 5300107 ~ 5304429 (-) True G115183

Expression Profile