RNA id: TU143753


Basic Information

Item Value
RNA id TU143753
length 2167
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id G114785
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 3908019 ~ 3910399 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

attttgtttttcttaaatcaatCACAAGACACAGAAGTATTGTATGCCTAAAACCCTACATGCTTTTATTACAGGACTACCAAGCATTACGTGGAAAAGTCATCATTCAACAACTACACCTGGAGCACAAATAATTGGAAAGAGAATGTGAACAGATTCATTAAATTATGAGAAATATGATTAAATCACTGACCAAATAGAAAatttatataagaaaaaaaaaaaaaaaaaaaaaaagttgtaaaatATCAtagtttacaataattattcaCATTCAAAGGCATTACATCTCAATACATACACAACATGGCCCCTGAACATGACTTCAATCCAAATATGATTCATATATTAGAATTTAAATAACACAGAATGAACTAGAGGCTAAACAATAGCCAGCAAATAACCTtatacaagaataaaaatacaaaaagtgtgtGTCCTATTATCATTGCATTACTTGCTTTCAGATTTCAGTAATACGTCATCTGTACATCACAGTTCTAGTCGGCTACGAACCAGGTagagttttaaatacacaatgtaacCGACTTGTCGCCAAcctgataaaagaaaaaaaagaaaaaaaaaagtcctagCAAGAGAAGATGTATCACTTCCTGTACTTGCCAGCTGTAAAGATAGATTCAGCAATTCCAACTGCCATTTGGATTGTATAGCTCCTGCGCACATCGATTACGTCCTAGTCTGCGGCCGCGCCTAAACAAACACGTGCCGTCCACACGAGGACTCCCACCGCGGGGGTGGGAGCTGCGCACGGGGCGGGGAGACGGCGCGGACACACCCGCTTGTAAACCTGGCCGGGACCGTGCCGACCGACCGACCGCACGGCCGCCTCACGTCGAGTCGCACCCGAGTTTTTGCTCACTAGTAATTGTATGTTTCGGCGAACCTCTACGCCGAAGCTACTGTGATGATGGAGGCCGGCGTCCGATTCCGCTCAGACGGCACACACTTGAAGCAGCACaagaggaaagaaaagtgtGTCTGATTACAAACTGTGGTGAAGAAGATGCCCCCCCAACAGGGCGGATCATATAATACAGCTAGATAATTGAATCCTACTTCCTATGGttgtcataaaaatacatatatatgtgtgcatacatattatatacacatacataaatatatatatatacacaaacacacacacacacacacatatatatagatatgtatacattcatacacagatctatatatatatacacacacacacacgtaactCCAGTGCTGTTCGTTGTGTTCTAGACTCAAAGAGCTCCCACAGCCGTCCGAGAGCGAACATCGCCAAAGAGGTCTCTAAGAGAAGTACTGTGATCGCAAATCTACAACTGGCCATGCAGTGCGGCGGAGCGAGCGTCACGATTTAAAAACTAGACCCGCGCGCCGCTCCCCCCGGGACACCGCCTCCACGGCAGGACACACGCCCCCGGGCGCGGACGGCGACGCTATATTTAAGTACCACTGTAAACCTGCACGGGCTCCGTCTGGAGGGTGAGGCGAGGCGCCGCCGCCCCGGACCGCCAGCAGGAGATTCTGAGAAAGCCCCTCCGGACCGaaaggaacaaaacagaaacacccGGAACAAACAGACGGAACAAAAACAACCGAAGAGAAACAATGTATCACATGTTAACGAGTTTTTGAAGGCTCCCTGACAGacgagaaaaaaaacagttcggataaaaatgaataaaaataaaaggggtCACAGGGCTGCTGTACACTCTGGGTGTGCGTGTGGGTTTATACATTACTCTTAGTGAAGCGGATTCgacacaagtttttttttcgttttttttttttttttttttttgttttcgtttttaaagaggaaaaaattaATTCTGAAGCCCGccttcctaaaaaaaaaaaaaaaaaaaaaacgtggtGTTACAACTCTCGTGGTCAAGGGGCACTAAGGGAAGGCTGTCTGTTGCTCTGTCACggagatctctctctctctctctctctctcgggaaGCGAGGTCTGGCAACAACGCGAGCAAGTGGACCCTTCCGGCACTGGGACCTAGATGGCCGTGTTCTGGTTCTTATGGTAAATCTTCCGCCACACTTCTTGAATCTTCTTGCACCATTTATCAGCGTTTCCACTAGGGTCCATTAGGTAATATGTCCGGTTA

Function

GO: NA

KEGG:

id description
ko04975 Fat digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143693 lncRNA downstream 506081 3400432 ~ 3401938 (-) True G114739
TU143670 lncRNA downstream 766709 3140095 ~ 3141310 (-) True G114720
TU143625 lncRNA downstream 830259 3077041 ~ 3077760 (-) True G114681
TU143599 lncRNA downstream 909761 2996035 ~ 2998258 (-) True G114658
TU143462 lncRNA downstream 1239358 2668460 ~ 2668661 (-) True G114554
TU143815 lncRNA upstream 117617 4028016 ~ 4064248 (-) True G114838
TU143819 lncRNA upstream 117617 4028016 ~ 4087031 (-) False G114838
TU143822 lncRNA upstream 117617 4028016 ~ 4087031 (-) False G114838
TU143814 lncRNA upstream 150412 4060811 ~ 4064248 (-) False G114838
TU143817 lncRNA upstream 150412 4060811 ~ 4064248 (-) False G114838
AMCG00018177 mRNA downstream 81455 3815535 ~ 3826564 (-) True AMCG00018177
AMCG00018176 mRNA downstream 98499 3778175 ~ 3809520 (-) True AMCG00018176
AMCG00018171 mRNA downstream 424116 3481708 ~ 3483903 (-) True AMCG00018171
AMCG00018170 mRNA downstream 508100 3399293 ~ 3399919 (-) True AMCG00018170
AMCG00018169 mRNA downstream 740856 3161231 ~ 3167163 (-) True AMCG00018169
AMCG00018187 mRNA upstream 103532 4013931 ~ 4018824 (-) True AMCG00018187
AMCG00018188 mRNA upstream 115344 4025743 ~ 4026925 (-) True AMCG00018188
AMCG00018186 mRNA upstream 123291 4033690 ~ 4057473 (-) True AMCG00018186
AMCG00018185 mRNA upstream 155461 4065860 ~ 4067317 (-) True AMCG00018185
AMCG00018193 mRNA upstream 184588 4094987 ~ 4096066 (-) True AMCG00018193
TU143456 other downstream 1298540 2609145 ~ 2609479 (-) True G114549
TU143313 other downstream 1619157 2281700 ~ 2288862 (-) True G114430
TU143230 other downstream 1840435 2006906 ~ 2067584 (-) False AMCG00018111
TU143224 other downstream 1901383 1985149 ~ 2006636 (-) False AMCG00018113
TU142990 other downstream 2981280 923507 ~ 926739 (-) False AMCG00018077
TU143816 other upstream 150412 4060811 ~ 4064248 (-) False G114838
TU144050 other upstream 675663 4586062 ~ 4588297 (-) True G115020
TU144068 other upstream 736178 4646577 ~ 4651612 (-) False AMCG00018220
TU144242 other upstream 1375987 5286386 ~ 5287873 (-) True G115174
TU144251 other upstream 1389708 5300107 ~ 5304429 (-) True G115183

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00046674 True 3213 mRNA 0.48 14 NC_007135.7 37301852 ~ 37326236 (-)
grasscarp (Ctenopharyngodon idella) TU542287 True 2202 lncRNA 0.47 6 CI01000329 221561 ~ 225420 (+)
mexican tetra (Astyanax mexicanus) TU129596 True 1859 lncRNA 0.47 4 NC_035907.1 770086 ~ 776473 (-)