RNA id: TU143859


Basic Information

Item Value
RNA id TU143859
length 3774
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G114868
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 4194277 ~ 4198050 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCTTTGCTTTTTGGAAACAGATATCCTTTCCCATCGTTATCAGTTGTAAaagtcaatatttattttatcctaTTTCCAACCAGATCACATTGAACTCTCTCCTCTCCGTGGGCTTCATTCAAAGGGTCAAGCACCAAATCCTACCTTTCCTTTTCCTCGCTGCGCTCAAAGGCCTGGTCCAGTGGCTCTCTGTGACTGAACAGGGTTccttacagacacacacacatggaaaaGATACAGCTTATGGTGCAAGATTGTATATTTATGTCAGAATTGCATTGTGACAGAGAAAGTTTTAACCTTAACCTTATAAGATCGCTGAATGAAAAAAACCCAAACAGTATATTTTCTATGCAGATCATGAATACAATTGTAACAATCATCccagcacagcactgacacaaagCGATTGACGCAGTCATTAACGGCAGAAAGTGAAAAGGGTGTTTTCTCTTAGGTACATTTCTTTTTGACCACTTTTCTGACAATTTTCGGATTGTTGTAAGTGTTTGTAATAATGGCTACAGTTTCAAAGCATTCTGATCAGAGTTCCTGATGGGAACCAGCTTCAAAGCTATTAAGGATTTAACAGGTATTTAGGTCATAAGTtgtaactgaactgaactgaaggcTAAAATGTGTAGATGGATAATAAACGAACCCTAAAGCTCAACTACTTAATTTAATAGAtcagttacttaattggtctCCAGTAACCCCTTTCTCAGGTCTTTAGTTGATGGCAGATTAAAGAGATTTATAATCCCTGCAGGATGTAGCTCTCCAGAGACAGATGTTGGGAACTATGATTATAAAATATCAACTGTAactgtttaatatatacatttaaatggacTTTCCTGTTTGTAAGCAAAGTTTCCCTCTTTTCATATTAAATTCAGCTGTCATTTCCAGACAGAATGGCTTCGCCGACATCCTGTTCTGTGGTCTTTCACATTCACCCCCTAGATCTGTTACCTTTTCAGTTTGGACAGTTACAGTCTTGGCTCAAACAACCAAACTAGGTACGCTTTTGATTCAATCTATTAATAGCCAGGCTCCGGGAACCTGACTTGTTGGAATTAGGTTTTTGAGAGAAGGCAGGTTATTTAGCGGTGTCTGCTTTTGATTGTCTTGGCACCAGGGGTGACTGAGAGcgagcaaacaaacaagatcGCTCATGAATTGTGGCACATAAGGAGCCTTAGAGTAAGACCTTAAACTGGGGATTGCCCTCCTCCTCAAATAATTACCTTAGAACACTGTAAAATCAGGCATTCTAATGTAACAGGAACAGATCCGTACCATTGTAAAATTAGCAccccacaaaaacaacaaaagtatgTTATTCTCATGGTTATTAAAGTCATTAAGTCATTAAATCactcttgtgtttttgtgtgtgccaTCTTGGGCTTGGTGTGCTGTCTCACTTGTACTATCTCCATGTGATGACGTCTCATTTTAGAATGATCAGGGATCTGTTTGTGGGTCTACACCTGTGATGGGCAACTCTGGTCCTACAGGGCTACAGTGTCGTCTGCTTTTTGTCCCACTGAATCGAACTGTTGATCTGCCGAAGTGAAACAATGAAGCTATGGTCCCAAGTTATGAGCAGGGAGGGATGCAAGAAGACCTAAAAAGGGCCAAGGTTGCCCACCACTCTTCTACACCCGTGGAATATGAGAAAATGATTAAACTGTGGCATACATCTCTAGACTGGAATGACACGCCTACCGACACAGCTCACCCCTCATCTATCCTTCCACCTTCGCAGAGTTTAGCGGGCAACCCTGGAAGTGTTCATTGCCAATGTCCCGCAGGTCGGACCCAGCTAAGCTGGAGGGGCTGCTGCAGGTGATGTTGTTGTAGACCTGGACAACCGAGTACGGCTCCTCTCCCTCGACCAGGGTCTCCACCTGACGGGGGACCGCTCTCGGTTTGCTCAGGCTGTAATCCCTGAGGGGCAGGGCGGTGCAGTCGCAGTTCCAACGGTTCCCGCCCAGCCACAGCTGATCCATACTGTCGGGGATCTCGGCGGGGAAGGTGGTCAGGGCGTTGTCCTTGAGGTTCAGATAGCGCAGCTTGGGGAGGAGCTGCAGGGTGCCGTTCAGGAGAGACTCCAGCTTGTTTGAAGACAGATCCAGCCAGGACAGGCACTGGAGGGGAAGGAAGACCTCCGTGGGGACTTGCTGGAGCAGATTGCCGCCCAGCAGCAGGTACTCCAGGTTCTTCAAACCAGAAAATGTGTGAGAAGACAGGGACTCCAGATTGTTGAACCTCAGGTCCAGCTGCTGAAGCCCTGGGAGCTCCGCGAAGCTCTGGCGCTCGATCAGAGAGATGTTGTTGCGCTGCAGGAAGAGCCGCCTTAGTCCCGTCAGCCCGGATAAACCCTGAGGTGAGATTTTGACCAGGCAGCTCTTATCCAGGTGCAGGCTGTGCAGCTTAGACAAGCCCTTGAAGACCTGATCCGGGAAGCTCCCGAAGCAGCTACCGGACAGATTTATGATTGCCAGGTGGGGCAGGCCGAAGAAAGTCCCCATGCGTGCCTCCTGTATCTGGTTGTGGTCCAGCTCGAGCACCTCCAGGTGACTCAGTCCCTCAAACACACGATCGCCGAGCACCTTGATGCGGTTGTGGCTCAGCCGCAGCTCCTCCAGGTACTGCAGGTCGCGAAAGGTCCTGGGGCGCAGCTGGCCAATGGCATTGTTGGAGAGCCGTAGGACATGCAGGCTGTGCAGGCCAAGGAAGGTCTCCTCATGGAGGCCGGACAGCCGGTTGTTGGTGAGGTCTAACCAGCGTAGGGACTTCATGCCCACAAAGGCTCTGGGTGCTACAGTGTGAATCTGGTTCTGGCTCAGGTAGAGCTTATGCAGCTTTGGCAGCTTCGGAAACACATTGGCCTTGATGACCTTCAGGAAGTTTCCTGTGAGGTCCAGCTCCTTTAGCTCCACGAGGCCATGGAAGAGCTGTGGCTGCAGGTAGGCCAACTTGTTCCCCGCCAGTACCAGCTCCCTGAGACCCTGTAGGTCCCGAAAGCTGGTCTCTGGGAGCACCACCAGGGAGTTCCAGCCCAGGTTAAGCAGCCACATGCTGGAGAGCCCAGAGAACAGGCCCTCCTCAATGCGCAGCAGCTGGTTTTTATGGAGGCTGAGGGACGTGATGCTCGGGGTGTTCTGGAAGATTGAAGCAGGGAGAGAACGCAGACGATTGCGCTCCATGTGCAAGTAGGACAGGGACCGAAGCCCGCGGAAAGCCTGGGGGTCTAAGCTGGACAGCTGGCTGCTCTCCAGGTTCAGGAATTCCAGGCTGGACAGGTCTTTGAAGGCTGAGGCTGGCAGAGAGGTGAAAAGGTTGTTGTCCAACCACAGGGAGCGAGCGGCCGGGGGGATGTCGGGGGGGATGTGTGTGAGGTTGAGAAGGTTGCAGTACACGCTGAGCTCGGAGGTGAAGGTATTGCGCTGGCAGGTACAGCCCTCGGCACAGGGAATCGGCTCCTCTGTTGGGGGCACGTCTCCTTCCAGCGTTTGCTCTGGAGACGCAGCCAGCACGGCCAGGACACAGCCCAGGATCACGGAGGTATACATCACCGCTGAGGGGAGATGCCGCAGATAAGTCACAGATTCCTGCCCCTGTCACAAACATACACCATTTCACATTTGATTTGGAATATCAAAGCATGCATCAcatctttccctctctttcgATACATGTATGGTTATGTATGTCACTatttccaattattatttttctaagtgCAAATACAAGTTAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143858 lncRNA upstream 281 4193342 ~ 4193996 (+) True G114867
TU143777 lncRNA upstream 175295 4016078 ~ 4018982 (+) True G114806
TU143685 lncRNA upstream 957033 3237043 ~ 3237244 (+) True G114731
TU143647 lncRNA upstream 1025295 3168163 ~ 3168982 (+) True G114699
TU143648 lncRNA upstream 1025451 3168163 ~ 3168826 (+) False G114699
TU143885 lncRNA downstream 100588 4298638 ~ 4301678 (+) True G114888
TU143949 lncRNA downstream 188130 4386180 ~ 4386889 (+) True G114940
TU144005 lncRNA downstream 391245 4589295 ~ 4590074 (+) True G114984
TU144007 lncRNA downstream 395410 4593460 ~ 4593845 (+) True G114985
TU144096 lncRNA downstream 615968 4814018 ~ 4814419 (+) True G115061
AMCG00018196 mRNA upstream 947 4186410 ~ 4193330 (+) True AMCG00018196
AMCG00018189 mRNA upstream 22352 4169235 ~ 4171925 (+) True AMCG00018189
AMCG00018190 mRNA upstream 31677 4160391 ~ 4162600 (+) True AMCG00018190
AMCG00018191 mRNA upstream 39842 4139448 ~ 4154435 (+) True AMCG00018191
AMCG00018182 mRNA upstream 117481 4069108 ~ 4076796 (+) True AMCG00018182
AMCG00018197 mRNA downstream 11083 4209133 ~ 4211747 (+) True AMCG00018197
AMCG00018203 mRNA downstream 97558 4295608 ~ 4296231 (+) True AMCG00018203
AMCG00018204 mRNA downstream 144884 4342934 ~ 4347960 (+) True AMCG00018204
AMCG00018211 mRNA downstream 296393 4494443 ~ 4515088 (+) True AMCG00018211
AMCG00018214 mRNA downstream 320413 4518463 ~ 4524338 (+) True AMCG00018214
TU143856 other upstream 1163 4191717 ~ 4193114 (+) False AMCG00018196
TU143458 other upstream 1546503 2640846 ~ 2647774 (+) True G114551
TU143421 other upstream 1626742 2566084 ~ 2567535 (+) True G114518
TU143175 other upstream 2213898 1979046 ~ 1980379 (+) False AMCG00018106
TU144009 other downstream 403440 4601490 ~ 4603989 (+) False AMCG00018216
TU144084 other downstream 563468 4761518 ~ 4763905 (+) True G115049
TU144414 other downstream 1751413 5949463 ~ 5951017 (+) True G115299
TU144781 other downstream 3695577 7893627 ~ 7894449 (+) True G115590
TU144853 other downstream 3921728 8119778 ~ 8122171 (+) True G115648

Expression Profile