RNA id: TU143949



Basic Information


Item Value
RNA id TU143949
length 710
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G114940
representative True

Chromosome Information


Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 4386180 ~ 4386889 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TTTATTGTATGAATACAGGAAGTAACAATAGTTAGCATTCGAAGGAAACTAGGCAAATACACAGAAACAGTTTTTCAAGGCTAAGTTCCCATGGTGCACCCTGATGAGAGCATGTGACGACACACTGGAATGATCCTCTCCTGACATTGCGATGGGTCCCAGGGGTCTCTCCAGGCCAgctgtacattttcataaagattTCGATTAAGCCACAGTAATGTTGTTGTTGGAGCAGAGACCTAAATTAGACACTGAAACATTAGCTCTGTGAGATGGCTGTCTAGCATTCTAGTATATACTTTGTTCATTAGGAGCAGTTAGCATTGATTgagttgggggggggtggaggaggcATTGATTTTTCCTTTGTATTGGTTGTCTTTTAATTTCCAATTCACAGCTCTAATTTGTACTTTACCTTTCCTTTCCTCTACAATGTTCCTGTAAGTCCCTACAAATTCCTGCAGCCATCCTTTTGTTCAGTGTACATCACAGTCGGGGTTACACTTCTCTGCCCTCCTGGAAAACAGTTAACATACTCTCTCAGCTGTGGATTCGTCCACGGCTCCCAACTCACCTGTGGCCCTCAGACAGGGAACCACAAGGTCCGGATGGCCGTGACACTGGGTTTGGTCACAGTACAAATGGAAAGACAAGCCACAGTACACTTTATGTAATTCATGAAACAATACTGATAATAAGAATTCATT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU143885 lncRNA upstream 84502 4298638 ~ 4301678 (+) True G114888
TU143859 lncRNA upstream 188130 4194277 ~ 4198050 (+) True G114868
TU143858 lncRNA upstream 192184 4193342 ~ 4193996 (+) True G114867
TU143777 lncRNA upstream 367198 4016078 ~ 4018982 (+) True G114806
TU143685 lncRNA upstream 1148936 3237043 ~ 3237244 (+) True G114731
TU144005 lncRNA downstream 202406 4589295 ~ 4590074 (+) True G114984
TU144007 lncRNA downstream 206571 4593460 ~ 4593845 (+) True G114985
TU144096 lncRNA downstream 427129 4814018 ~ 4814419 (+) True G115061
TU144143 lncRNA downstream 708259 5095148 ~ 5100938 (+) True G115099
TU144260 lncRNA downstream 929564 5316453 ~ 5317925 (+) True G115188
AMCG00018204 mRNA upstream 38220 4342934 ~ 4347960 (+) True AMCG00018204
AMCG00018203 mRNA upstream 89949 4295608 ~ 4296231 (+) True AMCG00018203
AMCG00018197 mRNA upstream 174433 4209133 ~ 4211747 (+) True AMCG00018197
AMCG00018196 mRNA upstream 192850 4186410 ~ 4193330 (+) True AMCG00018196
AMCG00018189 mRNA upstream 214255 4169235 ~ 4171925 (+) True AMCG00018189
AMCG00018211 mRNA downstream 107554 4494443 ~ 4515088 (+) True AMCG00018211
AMCG00018214 mRNA downstream 131574 4518463 ~ 4524338 (+) True AMCG00018214
AMCG00018213 mRNA downstream 139111 4526000 ~ 4529339 (+) True AMCG00018213
AMCG00018212 mRNA downstream 182944 4569833 ~ 4584912 (+) True AMCG00018212
AMCG00018216 mRNA downstream 208044 4594933 ~ 4604105 (+) True AMCG00018216
TU143856 other upstream 193066 4191717 ~ 4193114 (+) False AMCG00018196
TU143458 other upstream 1738406 2640846 ~ 2647774 (+) True G114551
TU143421 other upstream 1818645 2566084 ~ 2567535 (+) True G114518
TU143175 other upstream 2405801 1979046 ~ 1980379 (+) False AMCG00018106
TU144009 other downstream 214601 4601490 ~ 4603989 (+) False AMCG00018216
TU144084 other downstream 374629 4761518 ~ 4763905 (+) True G115049
TU144414 other downstream 1562574 5949463 ~ 5951017 (+) True G115299
TU144781 other downstream 3506738 7893627 ~ 7894449 (+) True G115590
TU144853 other downstream 3732889 8119778 ~ 8122171 (+) True G115648

Expression Profile