RNA id: TU144050


Basic Information

Item Value
RNA id TU144050
length 2236
RNA type TUCP
GC content 0.52
exon number 1
gene id G115020
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 4586062 ~ 4588297 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NNNGGGGATAAAAGAATGAAAAGGAAGTAAAAACAAACGCCAATGACAAAGGCCACTCAACTTGCTACCTGCAGAAGGTTTTGTCAAGGATTTGTTCTGTGAAGGAAAGGCGAGCTGGTCACGAACACCGTGGGCAGATCCAGTCATTGTGCCATGTGACAATAAATTAAGTAGTGCATTATTGGGTCTGTCTTAAATCTCTCGGCTCATACAGGGCAGGAATGGACACTGATCAAGCGACACCCCGCACCTGGGCAGCACAACCCAGACCCATTACTCTGGAGCGGAGGGCCAGGGGACGTCCCAGAAACCAAGCTGAAGAGGAGATGCGTCTCCTGGCTCTGGTGTGGGTTTAGCGGGTCTCGCTGCAAGGTGCTCAGATACTGGGCTAGGAAGCCAAGCGAACGGCGAGCAGAGGGGGCTTTCAGAGCGGGCTCCCTGGGggccccccacctcccccagaCGGCTCCTTCAAGTGCCACGGAGCAGACAAGCGGGCGGCTGAGGATTTCCTGCGTTTCCTCTTCACAGACATTACAGTGAGCAGAGGCAGAAATCAAAACCGGCGCAAACAAATTAAACGAAAATAAGTGAAAGTGGCAACAGCTAAGTAGTGCGTAAGACACTCACTCCGCACGGCAGCAGAGCACGGTGCTACCAGCTCACTGAAGAGGAGAAATAAAAAGCTATTTGGTGGAATAAACCGCTCCTCGGCACTGTCCTGTGACAGCTGGGAGGAGCTGTGCTTGTAGCACCTAAAACGAGCCACGAAAACGTCAGTTCCCTTCAGGATCCAGAATGCAAAGTATTTACAGACCAAACAGTGCTGGAGTGagtgtttcatatatatatatatatacacaaggtGAGATTAAGAGTCAGGTGAGCGGCTCCATGAACAGTCATTCTCCTCCGATCTATAAAAAATACTCAGGATCTacaagatagaaaaaaaaaaaaaaacttatacATGTACAGTAATTTACATCCAAGGCCatttgcaagaaaaacaaaacattaagaaGCGAGCGTTTGGGTGCAGGAGCGAGGCCGCTTCCTTATCcatgccccccctccccaagcACCTCAGAGATCCACGCCTCAGAGCTGGACAGTCCTGATGGCTCCAGTCACGGCACGCCCCCGGAAAGTGATATGTTGCTTTAAGGGAGTCTGACGGTCCTTCAGCGGAGATCACGCTTCCAGCTGGACAGTCCCACGGCCCTGCGACGGCTGGCCGGTCCTCTGAGAAGTCGCTCGCTCTCCCGCTCCAATCACAGTCCACAGCATCGTTCTGATGTCATCTCTAGTTATTGCTAAAGGTCATCCATGCAGTTTTTAAGTTATTTGCGTTTTCCTCAAGGTGCTGCTCTACTGAAGGTCGCTGTGAGTTTGCAGCCATCTAATGAAGTTGTTCCTGGAGTCGATTCCCGTGTGGAAGCTCTAGAACTTGCATTATTACACTAAATTGTTAAATGCGATCATATAAGCACTTTAAAGCAGTCGCTTATCTGCCACATGATcgattgaaattaaataaacttcaaACCACGTGATATTTGCTCGCTGCTCAGAAAAACGAGAGGAAACACACAAGCGGTGTATTGActgacaaagacaaagacattcTCAACCGGGAGGCGAGCGAGACGAATGGGCCGCCTTGCAACCGAGCCTCTTACCCGACTCGCATTCTGCATCTCCCCCTGGGAATCGTCCGGCCCGCGCCGCAAACAGCCACCCTTGTCGTGGAGTTTCTCTCGGACCGATCGGTGCCGTTACAAAACACAACGTGACAGACCCGGGCACGACCGCGATTACGGTGGTCCGGTGACGAGAGCATGGCACAACGGCACGGCTCAGAAGGGCGGTGCTTCCGTGAAACCTAATTTAAGCCGGCACTGGTCGACCTGGAGAAACCGCGGACACGTGCATCTGTTAGGGGTGGACCGGCACAGCCTCTCCGTTTAATTGTATATCTTTGAGGAGGCCGGATGGACAGACTCTTCCTGTACTTATAAACATACGACTGCCACCTCCTCCCCCAGTCAAACCCTGACATGCTTGTCCTCTACTCCGCAGCATTAAAGCCACATGCAAGAACCGCAGAGTTCAGGGCAGAGCTGCGTGGCTCCGGTGGTTCGCTCATGCCTCTTCAGAAGCCCGGCTCCAGAGATACACACTTGGGTCTGTTTCACATGGGCTTTTCCCTTTGCCGGTACCCCTCTCGCTGGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143950 lncRNA downstream 199171 4385933 ~ 4386891 (-) True G114941
TU143920 lncRNA downstream 233699 4295311 ~ 4352363 (-) True G114915
TU143819 lncRNA downstream 499031 4028016 ~ 4087031 (-) False G114838
TU143822 lncRNA downstream 499031 4028016 ~ 4087031 (-) False G114838
TU143815 lncRNA downstream 521814 4028016 ~ 4064248 (-) True G114838
TU144051 lncRNA upstream 998 4589295 ~ 4590068 (-) True G115021
TU144070 lncRNA upstream 91243 4679540 ~ 4679749 (-) True G115037
TU144111 lncRNA upstream 232668 4820965 ~ 4821411 (-) True G115071
TU144144 lncRNA upstream 448434 5036731 ~ 5058586 (-) True G115100
TU144191 lncRNA upstream 564755 5153052 ~ 5203873 (-) True G115144
AMCG00018210 mRNA downstream 125342 4457837 ~ 4460720 (-) True AMCG00018210
AMCG00018205 mRNA downstream 206015 4370469 ~ 4380047 (-) True AMCG00018205
AMCG00018208 mRNA downstream 226172 4350006 ~ 4359890 (-) True AMCG00018208
AMCG00018209 mRNA downstream 244577 4333059 ~ 4341485 (-) True AMCG00018209
AMCG00018207 mRNA downstream 254887 4315262 ~ 4331175 (-) True AMCG00018207
AMCG00018223 mRNA upstream 16854 4605151 ~ 4610325 (-) True AMCG00018223
AMCG00018221 mRNA upstream 33973 4622270 ~ 4628633 (-) True AMCG00018221
AMCG00018219 mRNA upstream 51407 4639704 ~ 4640258 (-) True AMCG00018219
AMCG00018220 mRNA upstream 57850 4646147 ~ 4651641 (-) True AMCG00018220
AMCG00018222 mRNA upstream 77888 4666185 ~ 4672356 (-) True AMCG00018222
TU143816 other downstream 521814 4060811 ~ 4064248 (-) False G114838
TU143456 other downstream 1976583 2609145 ~ 2609479 (-) True G114549
TU143313 other downstream 2297200 2281700 ~ 2288862 (-) True G114430
TU143230 other downstream 2518478 2006906 ~ 2067584 (-) False AMCG00018111
TU143224 other downstream 2579426 1985149 ~ 2006636 (-) False AMCG00018113
TU144068 other upstream 58280 4646577 ~ 4651612 (-) False AMCG00018220
TU144242 other upstream 698089 5286386 ~ 5287873 (-) True G115174
TU144251 other upstream 711810 5300107 ~ 5304429 (-) True G115183
TU144253 other upstream 711810 5300107 ~ 5304388 (-) False G115183
TU144300 other upstream 768549 5356846 ~ 5366754 (-) True AMCG00018251

Expression Profile