RNA id: TU144191


Basic Information

Item Value
RNA id TU144191
length 761
lncRNA type read_through
GC content 0.35
exon number 2
gene id G115144
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 5153052 ~ 5203873 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tgcATTCCATTTCTGCCATTCTTTATgggtcatttttaaatgcaataaaatcaGGAGGTGTGGTAAGTTGAGGAAATTTATTTGGAAATTAGACCTGTGAAACCCATCAGTGGGTACACCTTAAATGCAATCAAACAGCTGTACTACAGGAAAACATGTTACAAGTGTTTCGAGAATGTCAGCATtagattaaaacacacacagaactcCCACTCCATATCAGGACACTAAAGGCAATCTCCTTTTAACCAATTATTACATCCAGAGGAATTCCAAGCACTTATGACAATTACCCACTGTGCAATATTCTAACTATacatagatatatttataatatatatatatcatgggGAATTCAATAAAGACTTTTGCTCCATTTAAACAGCTTTATGAACATTTCaaaaattcataaataaaatcagtgaaaaacaaaactattccatATTTGTACAGTTAATTCCTCAACATCAATATGGAAATTGGAAACTGTCCCAAAAGGTTAGTCTTTAAGTCAGTTCTCCCAAGAAAATAGGAAAACGGATGACCGACTaacctggaagaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaattattgagATGAAGGAAAACAGCAGAAGTGCAGGGGGACAGGGTGGGGGACGGGGGATTAATTTGAGGTTATGTAAACGTTAGCCATGCTGGCGTACTAAagaaacaaagataaaatggaatgtggtctctctctcgcgctctctccCCAATTGGAGTGGCGTGTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144144 lncRNA downstream 94466 5036731 ~ 5058586 (-) True G115100
TU144111 lncRNA downstream 331641 4820965 ~ 4821411 (-) True G115071
TU144070 lncRNA downstream 473303 4679540 ~ 4679749 (-) True G115037
TU144051 lncRNA downstream 562984 4589295 ~ 4590068 (-) True G115021
TU143950 lncRNA downstream 766161 4385933 ~ 4386891 (-) True G114941
TU144208 lncRNA upstream 24107 5227980 ~ 5243187 (-) True G115157
TU144211 lncRNA upstream 27745 5231618 ~ 5233417 (-) True G115160
TU144238 lncRNA upstream 75213 5279086 ~ 5279296 (-) True G115170
TU144240 lncRNA upstream 80201 5284074 ~ 5284333 (-) True G115172
TU144241 lncRNA upstream 81072 5284945 ~ 5285516 (-) True G115173
AMCG00018232 mRNA downstream 327039 4823825 ~ 4826013 (-) True AMCG00018232
AMCG00018229 mRNA downstream 366570 4763728 ~ 4786482 (-) True AMCG00018229
AMCG00018228 mRNA downstream 391919 4746580 ~ 4761133 (-) True AMCG00018228
AMCG00018227 mRNA downstream 408480 4736365 ~ 4744572 (-) True AMCG00018227
AMCG00018226 mRNA downstream 455150 4695362 ~ 4697902 (-) True AMCG00018226
AMCG00018246 mRNA upstream 2510 5206383 ~ 5212355 (-) True AMCG00018246
AMCG00018248 mRNA upstream 19014 5222887 ~ 5225675 (-) True AMCG00018248
AMCG00018247 mRNA upstream 29747 5233620 ~ 5269405 (-) True AMCG00018247
AMCG00018245 mRNA upstream 75481 5279354 ~ 5283933 (-) True AMCG00018245
AMCG00018253 mRNA upstream 107284 5311157 ~ 5322315 (-) True AMCG00018253
TU144068 other downstream 501440 4646577 ~ 4651612 (-) False AMCG00018220
TU144050 other downstream 564755 4586062 ~ 4588297 (-) True G115020
TU143816 other downstream 1088804 4060811 ~ 4064248 (-) False G114838
TU143456 other downstream 2543573 2609145 ~ 2609479 (-) True G114549
TU143313 other downstream 2864190 2281700 ~ 2288862 (-) True G114430
TU144242 other upstream 82513 5286386 ~ 5287873 (-) True G115174
TU144251 other upstream 96234 5300107 ~ 5304429 (-) True G115183
TU144253 other upstream 96234 5300107 ~ 5304388 (-) False G115183
TU144300 other upstream 152973 5356846 ~ 5366754 (-) True AMCG00018251
TU144435 other upstream 746548 5950421 ~ 5951055 (-) True G115320

Expression Profile