RNA id: TU144242


Basic Information

Item Value
RNA id TU144242
length 1488
RNA type TUCP
GC content 0.56
exon number 1
gene id G115174
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 5286386 ~ 5287873 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCCAACTGATGTGTGAGGGCATTTCTCCCTgacctccaccccccaccctgtaCTTGCCCAGCTTTGGCTCCTGAAACAACATGCTACAGTGTGgcgtgtatacatacatacatacatgtgtgtgtgttacatatGTTGCACTCACTGGACCCCTCCACTGCTTGCACCCCAATccccactccactccactccgcAGGCACTGCCACTAAGCTCGGCCACCTCCCCCGGTCGGACCCGTCTCAGACTCggcctttttattttgaagggaCCGGCAGGTGAGTGGCCCAGGTGTCCAACCACAGGTACCCCCTCGACTCGCCCCATCATCACCCCGCTTACCTTTCCCCTTGGCCCCGCTGTGCCCATTCACGGCAGAGGCGAGGGACTCCTTCCTCAGGCGTTTGCTGGGCGGTCGGACGCTGGACCTGAGGAAGTGATGCTGGTCCTGGTTCTGGGGGTGCAGGTCCGGACCCggggcggaggaggaggaggaggcaggtACCGGTGCCGACCTGCATGGACCCGCAGATGATGGATGGAGATCTTCCTCCCCGTCTCTCTTTGTATTGCTCTCGTCGCTCCCCGGCTCTGCGCTCTCCTCTTCCTCGCCGCCTTCCAGCTTTCTGCCCGCTTTCTTCGCCCCTTCATCCCCGCTGCCGTCCCCGGGCTTCACTGTCATCCTGTCAACACATCAGCCAGGCACACCTTTCACATTTCCAGCAGAGCACCTCCATGCAATCAACTTAAAAAAGGCGAcaatctttttctctctcaacaTGGCCGCCGTTGTTTGTTTCAAATCCCCTTCCACCGTCCCGACAAAACAACCTGAAAACCCTCTCTCCGTGCAAGTGCAATGCCCGctaaaccccccaaaaaacacgGCAGGCCCTGATTGAGCCCGTCGTGTGAGTTTCCCCGCACTTCTAAGCCTCGTctacttttattttaaccaaCATCAATGCAAAGACAGACGCCTCCAGTTTAGCGCCCTGCAAAAAACCCAAACGACATTAATCTCTCGGCAACGCACAAGCTCTCGCTGGGATCGAGGCTCAAATAAAGTGGTTATTTGAAAAGGTGGGCTACCCATTTTGGTGGTCTTCGAGGGCGGACGGtatcttctttctcctcaccaTGGATCCGAGGTTTTTGGAGTAAAACAGCGGGTTAAATGGTGCATATTCAAGGCGAGATCAGGGCTTTGCCTGCGACGGTCTCCCTTCGCTCTCGCCTTTTCTCTGGGGCTGGAACTCGCCGCGGCTCCACTAGAAAACAGCTCCACTCTCTTCCCAAACTCGCTGCTCCGTCGGCTGATAACTTCGGATCAGAAAGCCCCCCGGACACCGAATAAAAACCACCTTGACCCCCACGGTTTCAGCTATCTATCCAGCCCGGGTGCAAGAAGGTGCGACCGGCCGGTTTCGTGCACTTTTACGCCGAAATGAAAGCTGCGCCGCTGCAACAGATCTTCCCCTCACTGTACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144241 lncRNA downstream 870 5284945 ~ 5285516 (-) True G115173
TU144240 lncRNA downstream 2053 5284074 ~ 5284333 (-) True G115172
TU144238 lncRNA downstream 7090 5279086 ~ 5279296 (-) True G115170
TU144208 lncRNA downstream 43199 5227980 ~ 5243187 (-) True G115157
TU144211 lncRNA downstream 52969 5231618 ~ 5233417 (-) True G115160
TU144244 lncRNA upstream 4150 5292023 ~ 5292259 (-) True G115176
TU144245 lncRNA upstream 5806 5293679 ~ 5293933 (-) True G115177
TU144247 lncRNA upstream 9041 5296914 ~ 5297182 (-) True G115179
TU144248 lncRNA upstream 9559 5297432 ~ 5298505 (-) True G115180
TU144249 lncRNA upstream 10768 5298641 ~ 5298857 (-) True G115181
AMCG00018245 mRNA downstream 2453 5279354 ~ 5283933 (-) True AMCG00018245
AMCG00018247 mRNA downstream 16981 5233620 ~ 5269405 (-) True AMCG00018247
AMCG00018248 mRNA downstream 60711 5222887 ~ 5225675 (-) True AMCG00018248
AMCG00018246 mRNA downstream 74031 5206383 ~ 5212355 (-) True AMCG00018246
AMCG00018240 mRNA downstream 114867 5155372 ~ 5171519 (-) True AMCG00018240
AMCG00018253 mRNA upstream 23284 5311157 ~ 5322315 (-) True AMCG00018253
AMCG00018252 mRNA upstream 44368 5332241 ~ 5342984 (-) True AMCG00018252
AMCG00018250 mRNA upstream 61765 5349638 ~ 5354923 (-) True AMCG00018250
AMCG00018251 mRNA upstream 72864 5360737 ~ 5366753 (-) False AMCG00018251
AMCG00018258 mRNA upstream 320717 5608590 ~ 5612475 (-) True AMCG00018258
TU144068 other downstream 634774 4646577 ~ 4651612 (-) False AMCG00018220
TU144050 other downstream 698089 4586062 ~ 4588297 (-) True G115020
TU143816 other downstream 1222138 4060811 ~ 4064248 (-) False G114838
TU143456 other downstream 2676907 2609145 ~ 2609479 (-) True G114549
TU143313 other downstream 2997524 2281700 ~ 2288862 (-) True G114430
TU144251 other upstream 12234 5300107 ~ 5304429 (-) True G115183
TU144253 other upstream 12234 5300107 ~ 5304388 (-) False G115183
TU144300 other upstream 68973 5356846 ~ 5366754 (-) True AMCG00018251
TU144435 other upstream 662548 5950421 ~ 5951055 (-) True G115320
TU144568 other upstream 1330602 6618475 ~ 6623613 (-) False AMCG00018291

Expression Profile