RNA id: TU144251


Basic Information

Item Value
RNA id TU144251
length 4323
RNA type TUCP
GC content 0.43
exon number 1
gene id G115183
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 5300107 ~ 5304429 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttttttttaaaactgtatttataacCACAAGGGTAAAAACACCTTTTACAAATAGAGAAACTCTTAAAACTGGAGGttcaacattttctcttttttctggaatattaaacaaccaaaacacttttttttcccccaactgTTAACAATAAATAgtccaaaaaaataatttacggTATGTTACAAAAAAAGGTCAGAGAAGATTGGAATtgttgtatatactgtacaaacacagagaagggattccataccaaaaataaaaataaaaaagatccCCGTTATTCATCTTATTTGAAAACATCATCCACATGTGTAGCTTCATATCTTTAGATCAGAGATCGGAGTCGTTACCCCTCTACGATACCTCggatatttaaacatttgcattcaCATTTGTTCGGAAAGGATTATTAGCATGTATGATTTTGAGAGGAAAACAAAGCCAAGGAAAAGAataaataagcttttttttaCTCCAGTTTTAGGATATTAATTATAAACAGCAATGGTCATACTTGCTATTAACACTTACTTACAAACATGcagtttttaatctgtttaaatatacaGCAGAGGGCAGGCACCCTCTCATGCACTATATTTAAGACAAACGCCTGGAGCCAAGAGTACGATGAATGTGACCAGCTTCTATAAAGAAGTTGTTTCGCCAAGTACGAATCTGCTCTAGCTGTACTCCGTTCAACCTTCCTGTCACCATCCTCTGCAGCAACCTCTCATAGCCCACACTCTTTAATGGGTGCTTATAGTTTCTGAACTATTTAGGGTTACTGCACATAAGCATAAACACTTTCCAAACTAGGGGTCTTGTTGAATGCatgaagaggttttttttttttttttttaagggggagggttaaacaaaaacaaatcacttatTATAGAACATCCTTTTCATTAGCAGGAACTCCTCGTGTTAATTCACCAACAGTGCGGTGCATTGTAACGAGCCATTGTAGTGTCTGTGGTCTGAAgggatgtaaaaaaacaaacaaaactcatAACGATATTGAATGGTGCTGTAGAGAAACGCTGACGGGCAGCACGTCCTTTTTAAAGGTGCCCTATTGTGGAGGAAACGTACACCACTTTTTCCTGGCAGCCTCTCTGGCAGATTAAGTGTCTTGACGTGTGCGTCGGAGAGGCGGCACACACTGGCCGCAATTCTTAAGACGCCGGTGGTTTTAACCCAGGCTATAGATCTGACCGGTTGTGCTGCACATCTTACCGACTCATCAATATCTCGAGAAGCCTGTTCTCAGCACTTCTGCCTACGAACGCAAACTTGGGGAGTGTCGACGCAGCATTCGCTACAAAATGCAATACGTGTCAGGGACAAATAAGCTTGCCAGAAAACCTTGAATCCATATCCACATCAATACCGAAAATACCTCGACATCTAAAAATATGATGATACAAAATCTTGTGAGCGTTCTGTGGATTTCTCTCGAGTGGGACAGTTTGATAGAAAACATTAACACCCTACAGGCGGCAACACCGGGCTTACCGGATCTAATTAGTGCTGAGCAACCCAAAACTGGACTGGATTATACACTCCCAGAGTTTCTGAAAGTGGTTTAAACTGGATTCAGGGATAAAGTGGCTCTTCAGTTATAGCTCAGCTGCTTGAATGAACACAGATTAGACACTAGTGGACTTTTTTTACCGAAATcgttaattttccattttacttTGCATGGGAAATGACACATGAAAGATAGAGTTCTGCCAAACAAATCTACTGCACCACACAGGGCTCAATTTCACATCCCTCAATATCAAaaagcaatcaaataaaaataaaaatgaaaccattagATATGAAGCTAGAACTGGGGGTCAATGCGTTCCCTCAGGATTTGTCCCTAATTCACATTTCGAAGGATCTGATCAGGTTCTTCCAAAAATAACAATGTCACAATTTGGCATGGAATGCCTTAGGAAAAAAACAGTTCACACTTGTTCATCATATATGGCTTTTTAAGTATTcacaaaaagttttttttttccctctctgttgTACATAATGTTTGACTTTATTCCACATGAATAAAACGATTCCCTTCATttagagagaggaaaaaaataaaataaagtatgacCAGCCCAGGCCTTCCTGTTGactttatttcctgtttgtattaTCAACATTTATGATAAGGAAACCAGTTAAGTAATAGTTTCACAATGAGAAGAACTCATCTCCGTACTTCTGCCACCATAAACCCATCTTGGCGGGGGTTCAAGCTTGGCATGGAGAGTCCGATGTGGTATAATGAAAACTAGGTCTCCAATTCACACACCACTTTCCTATTCCTCCTTGAGTTATGCTCACCCAAATGTCATTAAtgttcatttaatgtattagtaTTTTGTTCGTTTGCTTGTTGTTTATAGAGATTTAAAGCAGAGCTACCATATTAAATCGATGCAGGAAATCCCGAGCTTTGAAGGAAAACAATTCTATACGTATTCTGTCATAATACTTAGGTAGTTGCACTTGAAGCGGATTTGTCAGACGTTGCAATGTAAGTACACGTAGGCTATGAGAGTCGTCGTCTGGAGGAGTACTACATTCTTTTCATTGCTCGAAAAAATCTCAATCCAATATCTCCCACGGCCAAAGACAGAAATGAAATCTATTTCTTAAAAGACAAATAATCTCCAGCAAAGACAAACTGTGTGCACTCCGGTTGGGTACACAGAAATATTGAggattattcaaaataaaaacggTAGAGCGATAATGAAGACATTACCAACGCACAGACTGTATATCAAAGCTAGCCGCAGGGTCAGTTAAATAGATCTGTTGAACCTCCGTCATGTAAAATCACCGTCTGCCCGTTTGAACATCGAGTAAGGGAGAGAAAGCGAGAGGCTGCAGACGCCAAGAACAGATTCCTTCGCCGGGTCCCGGTCAGCCTGGCCGATCACAGAGCTGATCAGACCGATCAACCCTTTCGACTGACCTATCGGACCCCTCTGTGTCCCCGAGACCGCCCCTCTCCGTTTCGAGCGGCTCCAAAACCGATTTGTATAGCGGGGTGCATTAGAGACTGAGGCCAATCCAGCCTGGTGCCCCTGAGGTACAAAGTGAGGCCAAACCGATAATTGGAATCTAATGtactgcacaaaaataaaatctgtactGAGTGTTagtatgaaatataatattacagaaTCTGAgtttaaaaagacaacattaTCCACGAGAGCTGGTTGCGCCGATGTCAAAGTCAATCGCATTTAAAATCTCCGTTGAAAAAGGAAGCAAGGCACTGCTTTCAAAGGCCCGATGTGCTCGGCTTCTGAACATCCTGAACACGGACTGAAGACTGGAGTCTTGGTCGTAAAATAGCAAACTATTTATAAGCGGAGGTTGGGATCGCTTTACTACAACCGGACAGACTAGAAGTGTAATAAGGGACTAACTAGTTTTGGTAGCAATCACACGCCATCATCCGAATCTTCAACGGAGGTAAAAGCAAAAACCCAGTTCACCTTTTTTACTTAAactcttcataaataaaactgcagtaaCCAGGCCGCCGCAACATGGAAACCTACTGCCATGACGGTGATCTCTATAATAATCGAACAGAACGGCATCGCTCGCTGATTCAGTCCCAGCCACAGAGCGGGCGGGTTTGTTGATGAGGCGAATGGAAATGTgacattcttttaaataaataaaaaaagtttgaaattaaatgatttcTGCGGAGATGCCAGTCTTTGAGACGGAGGcgttttaacagttttgttttctttgttcagtgTGATAAAAGCGCGTGGAGGAGGTGGCGGGCGAAGGACTGGTGGCCGGTCAGGCGTCATGATCTCGCCTGTTTGGGAAGAAGAGAGCGGCGGCAACTTCTCGCGCGTCAGGACGGGGTTGCACGGCACTCTTCAAATATACCCCCACCAGAGCCAGAAGGGTCCGTGCGTCAGGCCTGCGAGCGACCCGGTCTCCCCGCCCGGCTCGGAGCTGCCAAGCTCTGGCTTCCTACAGCTGGGCTCTATCTATTGCACATTCGGTCAAACGGTTTGCGTCGCACACTCCTGCGGTCCCTGCGCTGCGGTCAGACGGGCGCCCGAGTCCATGGCCCCCTGTGCAGCGATCCCCCGAGGGGAAGAGCGGCTCCCCGGCGGCCCTGTGCTCAGCCGGGGCCGCCCTGGGACgagggggcaggggggggtGGTGGCGGCGGCTCGGTGACTGAGAGCTCCTGTGCCAGGTCGTTGAAGCGGGCGATGTAATCCACGCTGTTCTCGCTCATCATGCACACCAGCTGCGAGTCGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144250 lncRNA downstream 604 5299014 ~ 5299503 (-) True G115182
TU144249 lncRNA downstream 1250 5298641 ~ 5298857 (-) True G115181
TU144248 lncRNA downstream 1602 5297432 ~ 5298505 (-) True G115180
TU144247 lncRNA downstream 2925 5296914 ~ 5297182 (-) True G115179
TU144245 lncRNA downstream 6174 5293679 ~ 5293933 (-) True G115177
TU144282 lncRNA upstream 40058 5344487 ~ 5345134 (-) True G115202
TU144306 lncRNA upstream 41333 5345762 ~ 5349630 (-) True G115219
TU144307 lncRNA upstream 41465 5345894 ~ 5347413 (-) False G115219
TU144336 lncRNA upstream 303404 5607833 ~ 5608069 (-) True G115243
TU144385 lncRNA upstream 443029 5747458 ~ 5748359 (-) True G115277
AMCG00018245 mRNA downstream 16174 5279354 ~ 5283933 (-) True AMCG00018245
AMCG00018247 mRNA downstream 30702 5233620 ~ 5269405 (-) True AMCG00018247
AMCG00018248 mRNA downstream 74432 5222887 ~ 5225675 (-) True AMCG00018248
AMCG00018246 mRNA downstream 87752 5206383 ~ 5212355 (-) True AMCG00018246
AMCG00018240 mRNA downstream 128588 5155372 ~ 5171519 (-) True AMCG00018240
AMCG00018253 mRNA upstream 6728 5311157 ~ 5322315 (-) True AMCG00018253
AMCG00018252 mRNA upstream 27812 5332241 ~ 5342984 (-) True AMCG00018252
AMCG00018250 mRNA upstream 45209 5349638 ~ 5354923 (-) True AMCG00018250
AMCG00018251 mRNA upstream 56308 5360737 ~ 5366753 (-) False AMCG00018251
AMCG00018258 mRNA upstream 304161 5608590 ~ 5612475 (-) True AMCG00018258
TU144242 other downstream 12234 5286386 ~ 5287873 (-) True G115174
TU144068 other downstream 648495 4646577 ~ 4651612 (-) False AMCG00018220
TU144050 other downstream 711810 4586062 ~ 4588297 (-) True G115020
TU143816 other downstream 1235859 4060811 ~ 4064248 (-) False G114838
TU143456 other downstream 2690628 2609145 ~ 2609479 (-) True G114549
TU144300 other upstream 52417 5356846 ~ 5366754 (-) True AMCG00018251
TU144435 other upstream 645992 5950421 ~ 5951055 (-) True G115320
TU144568 other upstream 1314046 6618475 ~ 6623613 (-) False AMCG00018291
TU144582 other upstream 1333913 6638342 ~ 6643272 (-) False AMCG00018291
TU144767 other upstream 2438789 7743218 ~ 7773892 (-) True G115581

Expression Profile