RNA id: TU144306


Basic Information

Item Value
RNA id TU144306
length 3869
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G115219
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 5345762 ~ 5349630 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAGCTGCTCCCGGTGTGCTTTGAAAGAGTGGTGCTCTGGACCTGAATCTGTGTACCAAATATCACCTTTTCTTACAAGTAGCCACTTAACTGTaagctttatttttctatatattgtAGAATATCTGCTAAGATACTGTACATACGTTTCCTACTCCTTATTTCTTTAAACCGAAGAATAAGATGGAACAAACCTagtgccaaaataaatattataaatgtattttactgttgcatcaaatgcatcattttggaaaaaaaaaaaatatttaaaaacatgcaacttAGGAATTAAATGCAAGGAGAAATTGGACCTCTGAGAGAATCCTTATCCCGAGTCTTGAGACTTTGTCGACAATGTTGAGGTCACTGTTCATGTGAGAGTATTTGAACGTCTTGTATGTTGAGCAATAGGGAATGGACTAGAAGCCAATACCAATGATATCTCTCCCATCTCCCACCACAAACACTTATTGacttctgtgtttttcaggaaACCTCattaagaagagaaaaacaacaccgAGGTAAAATGACtaattcagatatttaattaGTGCTGTCTAATGCTATGGccactaaacaaaacaacaaaaggctTCATATTTCAATTGGGAGAttgagaaattgtattttgtataacaaGGCCAAATCATATCAGAATATTTCATGAAATCCTGAGTCTTGTCCTTCCCTGCCTTGCCTTTCCTCGGTGGTGCTTCCacaccagaaaaacaaactgtcaGGTGACAGGCCAGGGGCCTTCAGGAGGGAATTGGATTGCTCATATCCTCTCAAGCCCCTGGCTCAATAACTATCCTAGTTTCCCTACATAAACAACATCTCCCAGAAATGTGGTGTCGAGTGGCCATCTCACCAACCCTGTGACACCCCACATAGGATCTGTGTCTGAAAGATCTATGGCTGGGGAGGGTGTTtcctgattaaattaatttaggctGCTTTGTTCTCAAATCTATACATAGACGTATATTTATCTGAGCAGACAAATATTGGTTATTTGATCATGTATCAGTGATTACCCTATCAAAACAATAATAGCACTGCCTCCTTGGAGGCACATTTTCTTCGTATTAATATTTGTGCGTCGGGTCATATTTAGCGTATTAGTTCCCTGGATGCAAGGTGCTGTGTTGGGCAGCTATCACACCTGAGAAACGGCTTCTGCATCGCTTTAGACTACCATAGCCGGTGTCTAACTTGTGTGACACTAAATACGGGTTATCTTCCTGGGGAGACCAAAGCTACTTATTAAGCTAGGGCTCTGGAAGGAGGCAAATAAGAAATAGTCCCTCTCATTTCGTCCATCACTTGTTAATGTGAGGACAGACGATATGCTAATGCAAAGGATCTAATGATTTGCTTGCTTAAAAAAcagtacattgttttattaaatgttccaTTCTCTCCTTATCAAggactctcactctcacacaccaGGATGTTGTCAGCAGACACATAACTGGGATTgggatacataaatatatacgtGTGAAGAGATTTCAGTGTAGCTGATTTAGACTTGATTTTCCTCTCTTGTTCTGAATGGTTTCCCTGTCAGTTCACTGTGGCAGTTACTGCAGCGTCACCAAGGGACATGTTTAGATAGGATTGACATGGTAAATTCAGGTTTCCTGAAGAAATGAATGCTGTCAAttgtatagatttgttttcctccttaaATGGCAACTggaagtattaaaaaaaaaaaaacatttgcttattAAAGTAGTTGTAATCTTTTGTCAGCCAGGTGGGAGTGTTTGGTTGCAATGCTTGTGCTGCTGCCCCTTTTTACCTTCCCTTCCACAGTTCATTCTCctcaacttaaaaataataatatatttaggTTATTATAGCGCTAAACATTCCCACATGTAGCTGAGCTGTTTAAGTAACATCTGTCCAGTGCCACAGTAAACGACAGACAGCTGAAGTCTTCCTGTCTGTTTTCAGTGTAATTTCTGGTGCATTGTCTGTCACTCCCCTCAgttgactctctctctctctctctctctctctatatatatatatatatatatatatatatatacagctctggaaaaaactgcggccacttaacattgatttctgaacttagagtggtctcatttttttttccagagctgtatatatatacatgagcCTCAGCCTTTTGACCTCTTCTTCCAAAAGAACAATTGAtataaatttaattttttttttctgaaatacaaaaGCACTTTGATGAATGACTATTCTTAGTCCCTGGACTAGTAGTGGCAATAACCCGTGCCGCCCTTGGGAACAGACAATGCAAAGCACTTCCTGTCGAGTCGGCAGCGTGGCGGGGGGGATCGCCCGGCCCCCCGCAGTGACAGCGCAGTCCATCAGAGCAGACGCTGAGAAGGGAGTGTGACGCACTTCAGCCTttcacagatttgtattttttgtcgGAAGGTTaactatgaaaagaaaaaggtgtgTTACTGAAACAGCTCAAGCAGCGCATGCAGGAGGCCTAATTATATTTTCCTGATCATGTGATTACTGGCAGGACCGGTGACCTCATTGTCTTGATTCTGAAGACACTTGGTTATGTTCGTTTCATTACCCGAGAAACTCGTATAATAGCCTTTTCTGGAGTCTAAAAAAAACTACTTACAAATCTAACCTTTGTGCTCTCAGGCTTTTGTAAATCgcacaaatatttacattaatttatatatataatatatacacccAAATATGTTTTATAGCTTATTATATGCCTTAGTTTATAGGAAACTGTACCTATAATCCCATCCTTTCCTCTTGTGTGTGCATACTGTGTAACTCTCGCAACCCAGTGGAATCATATGTAGTTTTAGTGTAATTGTGAACAGAACGATTAAGTAATAGATCAAATTCACCCAGAGTATATTTTTGCAGCAGAATATGACAACAGTCCTGTGCAGCtgtgtttgtagtgtttttttaatccgtATCCCTTCGAGGGGAGAAAACATCATACGGTCCacagcctttttcttttcctgtgtgGTAGTTGCCCTTTGAAAAGCCTTTGCTGCTGCAGGACTCTTTTAATGACTTTCTAGTAACACCAGCACTAAATCCACCGAATCAGGTAAACCGGTCATTAATGATGCAGCTTACTCTCCAGTTTCATCCATAGCCTGTACTTTTTACGGCTAGTTTTCTGCATCACAATCTCCAGCATTTAGCAGTGCACTCTGAAGATTGTGATCAGGAAATTAAAGGATCATGGACCGTATGTTTGACCTCTTCGAAGAATGAACATCTAAATCAGACCTGGGTTTTGTAACTTCAGGACTGCTGACATTTTCAGACGTGCGAACAGGTGTTTCTCCTTTTCACCACAGGAAGGCCAGTCTCGTCTAAAATTGAAGCCTGAATCGGGCACAGCGTCAGGGAATCCAATGTGAAATCGTTTCAGGAGAAGGAGAAAAGGCAGATTAGGAGCTCTAGGAGTAAAAGGAATTTCGCTCAACCACTTTTCTATTGATGTGCTTATTACATGAAACCTGTCCAAGCACAGCGGCCCGGGGTCCTTGTCTCTCGCTCTTGGTTTgttctttcagtttctttaaagGGAAGGATATGCATTgatctttattttctcctcGGTTGCTATTTGTGTCTTTGCGTTTCAAAGGACATAAACATCACCTGACCAGACTCTACATTTGAATGTGTGACAATTTAGTGGTATTgaacactgcaataaatattCTTTATCTCGACATTCATTTCCcttgtctgtttgtctctgcTGGTGTGTTTCTTTGCTTCATGCATTTCACTTCGTCAGAATATCAAAATACCTCCGCGTTTCAATtgaagtaaaaa

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144282 lncRNA downstream 628 5344487 ~ 5345134 (-) True G115202
TU144254 lncRNA downstream 41333 5300263 ~ 5304429 (-) False G115183
TU144252 lncRNA downstream 41374 5300263 ~ 5304388 (-) False G115183
TU144250 lncRNA downstream 46259 5299014 ~ 5299503 (-) True G115182
TU144249 lncRNA downstream 46905 5298641 ~ 5298857 (-) True G115181
TU144336 lncRNA upstream 258203 5607833 ~ 5608069 (-) True G115243
TU144385 lncRNA upstream 397828 5747458 ~ 5748359 (-) True G115277
TU144386 lncRNA upstream 400153 5749783 ~ 5750043 (-) True G115278
TU144390 lncRNA upstream 400462 5750092 ~ 5753921 (-) True G115279
TU144387 lncRNA upstream 400655 5750285 ~ 5753921 (-) False G115279
AMCG00018252 mRNA downstream 2778 5332241 ~ 5342984 (-) True AMCG00018252
AMCG00018253 mRNA downstream 23447 5311157 ~ 5322315 (-) True AMCG00018253
AMCG00018245 mRNA downstream 61829 5279354 ~ 5283933 (-) True AMCG00018245
AMCG00018247 mRNA downstream 76357 5233620 ~ 5269405 (-) True AMCG00018247
AMCG00018248 mRNA downstream 120087 5222887 ~ 5225675 (-) True AMCG00018248
AMCG00018250 mRNA upstream 8 5349638 ~ 5354923 (-) True AMCG00018250
AMCG00018251 mRNA upstream 11107 5360737 ~ 5366753 (-) False AMCG00018251
AMCG00018258 mRNA upstream 258960 5608590 ~ 5612475 (-) True AMCG00018258
AMCG00018262 mRNA upstream 391399 5741029 ~ 5745704 (-) True AMCG00018262
AMCG00018264 mRNA upstream 433446 5783076 ~ 5784900 (-) True AMCG00018264
TU144251 other downstream 41333 5300107 ~ 5304429 (-) True G115183
TU144253 other downstream 41374 5300107 ~ 5304388 (-) False G115183
TU144242 other downstream 57889 5286386 ~ 5287873 (-) True G115174
TU144068 other downstream 694150 4646577 ~ 4651612 (-) False AMCG00018220
TU144050 other downstream 757465 4586062 ~ 4588297 (-) True G115020
TU144300 other upstream 7216 5356846 ~ 5366754 (-) True AMCG00018251
TU144435 other upstream 600791 5950421 ~ 5951055 (-) True G115320
TU144568 other upstream 1268845 6618475 ~ 6623613 (-) False AMCG00018291
TU144582 other upstream 1288712 6638342 ~ 6643272 (-) False AMCG00018291
TU144767 other upstream 2393588 7743218 ~ 7773892 (-) True G115581

Expression Profile