RNA id: TU144386


Basic Information

Item Value
RNA id TU144386
length 261
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G115278
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 5749783 ~ 5750043 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTAAGAGCATCATTACTTAGGCCGACCTCTTATTTTCAAGCTGTCTAAACCCGTCTAATCTACTGTAGGCAGTTTGACATGATTACACAACACAGTAGTAGCTGCTCAGCCTTACCCGTGATGTCTGGCTTGTCATCGATGAGAAGGTCCGCAGACACCACCGTCTTGTCTCTGGTCAGTATGATCTGCTCCAAAAACTCGTGGCCAAAATGCTTTTCTACCCAGGCATACTGAGAGGAAGAAAAGCTGAGCACTTTAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144385 lncRNA downstream 1424 5747458 ~ 5748359 (-) True G115277
TU144336 lncRNA downstream 141714 5607833 ~ 5608069 (-) True G115243
TU144306 lncRNA downstream 400153 5345762 ~ 5349630 (-) True G115219
TU144307 lncRNA downstream 402370 5345894 ~ 5347413 (-) False G115219
TU144282 lncRNA downstream 404649 5344487 ~ 5345134 (-) True G115202
TU144390 lncRNA upstream 49 5750092 ~ 5753921 (-) True G115279
TU144387 lncRNA upstream 242 5750285 ~ 5753921 (-) False G115279
TU144388 lncRNA upstream 242 5750285 ~ 5754022 (-) False G115279
TU144448 lncRNA upstream 295987 6046030 ~ 6046618 (-) True G115332
TU144532 lncRNA upstream 467485 6217528 ~ 6219216 (-) True G115395
AMCG00018262 mRNA downstream 4079 5741029 ~ 5745704 (-) True AMCG00018262
AMCG00018258 mRNA downstream 137308 5608590 ~ 5612475 (-) True AMCG00018258
AMCG00018251 mRNA downstream 383030 5360737 ~ 5366753 (-) False AMCG00018251
AMCG00018250 mRNA downstream 394860 5349638 ~ 5354923 (-) True AMCG00018250
AMCG00018252 mRNA downstream 406799 5332241 ~ 5342984 (-) True AMCG00018252
AMCG00018264 mRNA upstream 33033 5783076 ~ 5784900 (-) True AMCG00018264
AMCG00018265 mRNA upstream 44474 5794517 ~ 5808843 (-) True AMCG00018265
AMCG00018263 mRNA upstream 131503 5881546 ~ 5886000 (-) True AMCG00018263
AMCG00018274 mRNA upstream 318260 6068303 ~ 6124832 (-) True AMCG00018274
AMCG00018289 mRNA upstream 378670 6128713 ~ 6155791 (-) True AMCG00018289
TU144300 other downstream 383029 5356846 ~ 5366754 (-) True AMCG00018251
TU144251 other downstream 445354 5300107 ~ 5304429 (-) True G115183
TU144253 other downstream 445395 5300107 ~ 5304388 (-) False G115183
TU144242 other downstream 461910 5286386 ~ 5287873 (-) True G115174
TU144068 other downstream 1098171 4646577 ~ 4651612 (-) False AMCG00018220
TU144435 other upstream 200378 5950421 ~ 5951055 (-) True G115320
TU144568 other upstream 868432 6618475 ~ 6623613 (-) False AMCG00018291
TU144582 other upstream 888299 6638342 ~ 6643272 (-) False AMCG00018291
TU144767 other upstream 1993175 7743218 ~ 7773892 (-) True G115581
TU145207 other upstream 3489769 9239812 ~ 9258202 (-) True AMCG00018364

Expression Profile