RNA id: TU144387


Basic Information

Item Value
RNA id TU144387
length 3637
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G115279
representative False

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 5750092 ~ 5754022 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AATCATCCTTAAAGATATTGGCttattataacaattattatttttaagcacCAATAATAAGAcgttgaaaaaagaaaatcacatttgaaCCCCTGTGCGATTTGACAGTGAAAATCTTAATTTTTTGACAGGATATGAACACTATTGCCACTGCACAAACATTCCCCCTCGCATGGCAGATAAAATAGGTGTGTCTATATTAGCATGCGTATGGGTTACGATaaagtgtttgttattttattatggcTTTCTattgcatatattattattcatgtcaGGTGGCTTAATAAGAAACAAGTGCTCTTCAACCATACTAATATGAGAGGTGGGAAATAGGATCTCTCTTTCAAACAGGAAAAACAGTATGTACACTAACTTTATGAAACACTTTTTatgcataataatgataaattaaaattgtatttgtttttctgtgattcTCAAACTCATTTAAGATTCTATACAATACATGTGAATTTactcaattaatttaatagaaACACTACTGTTGATCaacctttgaaaataaaaaggagcATATAAATTGGAAAAGTGACATCTGTTTCTGACTGTAATGAACGATTTTGACATGGTGCGTATGAACAAACAGGACTGTAAAAGGCACAGAGCTaaatggtctctctctctcttcctctgtgtgaagagttttggCACAGTTTTAGTACAGTGCAACAGAAAATCTAAACGGTTTACAGGGTTAGAACCAGAGGCAATCCAACACAGTTATACATGAATTACAGGTCAAAAACTTTGGTAATTCAAcaccaaaagcaaaaaaacacaaagaaaagaggaattgcaaatctggaaaaaaattatagatttattttaatagaattcAGTGGTTATTcagccaaaataaaacaaagaaacacacaaacaaaagaaactcAACTTGTTCAAAACTTCCAAGCATTCAAGGTTTGAAAGGAACAACAAATCGACAAGAAAACTGTTGTCGCACGAAAGGACACAAAGCAAGTGTCGGCTCACAGCGCCAGACTCGTTAAGTGCCTGGGTGAATAGCAAGACTGTGTGAAGAGACATTCACTATTCCTTCTATAGGCATACATGAAAATGTGATTTCTGTATTGAAGGACAACAATGGGCGaacaacagagaaataaatgtaaaagtaaggtaaacaaaatgaaatgactaGACAAATGACGACAACAGTACAGTACTGCAAGTAAGAATGCCACCACTTTgtgtacaaaacaataaatggtGTCTCCAGAGCTTTCAAGTGGGCGGGTTTTGTTCtagtgagaaaacaaacacatgcacaagaattaaataattgatcCAGACGTACATATTTGATGCCTTTCAGGATAAACACCAGGACCATACCAACAGAAAGCACTGAGCAGAACATTCCCCTGAAGATACAAGTTGCACAAAAAGTGCCAGGTAGTTTCGCACCTTAGTGGTCCAGAAGGGAGCAACAAAAAACATCGCAGGAAAGCAAATCACActgagaaaaaatatgtaatgtgtgGCTGACACTTTCCCACTCCCCAATTCGCTAATAATTCGCAAACTCTGTGTAGTTTGATATAAAGTTCTGAATTAGAGAGAATCAACGAGCAGGAGAGCACAGTCAATCATGTTATATCACAAAGTGGTTTATATCATGCATGTGAGAAGCACCTCGCTGTACAGCAAAGACTAAATGACGGCGCttgatcatttcaaattgatcaagtttcatttttttttttttaaagagactgGTCACGATGGTACAGCAGGGGGAAAACACATTCGTTATATCAGGGAATTATTTCTCATTGCAAAGCGGTTTCCCTTCAAATTAGCCCATGCCAGAAATGGTTCCCCCCCCTGCTTTCTCTTTGCCTTCTGAGCTACGTAGCACTGGCTTGAAATCCTGTAGGCTTGACCTGTTTGCCTTCCATTTTCAAAGTtgaatattacaaatgtaatacaaagaCGTGTCACTGCAGAACTGTGTTGTGTTCTCCATTACTCAACAATGAGGGAGCATGTTAAACTGTTTAATGTAAGCTTACATTACTTCAGTCAATCAGCTCTACCCTGAAAAAATGATAACTATAATGGAGTGTACATAGAGTATATTGAAGTATACCTAACTGTACTGAGGGCCAAATGGCTCAAGTAATTTAAGCTAAGTTTAACTATCTAACAAACTCCCTAGTTGTTGAGTGTTTTCATCAGGGTAgttcaaaaaaaataatgaaaggacACTTAAACCATCAAAGCAAAACCTCCAGGATCTGATTTTCCTTGTGGGCAAGCTGCGAACAAGATGTAATTCATTCAGTATAGAGTGGGCAGTTTGCCCTCAGGGAAAATAAGTACCCAAGTCACCAAAACTCCCAAAGAATCACCACTGATACCCAGATGAGGTAGTCCTGTGAAAAATCCCACAGATATACACTTAGATTCTTTAGGGGCTCAGTATTTGAGTAACATGCATCTTAAACATTTCCACATTCCAGTTCCACTTCCTGTAACAAGGTGAAAAAGTAGACAAATGAATTGAACCCAAAGTAATCCTAAAGGTTTCCACTGAAGTAAATTCCTATCGGATGTATGTCTTTAACTGAAGAAAAGGAATTTGTGTAAGTCCTGTAGGTTTTTTTCCACAAGTTTAAAGAACTACACTATATAGAAATACTGCTGTATTAATAATTCTTAAGTTATTAATAACAGGATATATTTATGTAGGCTTTTGTAGTGAATCAACTGGGACCATCTTTGCAGAAAAGAAGCAACCGTGTAGAGAATGAATCAATTCACTGTGTTGCATATTTTTGTGAATATGACCAAGATATGAATCTTTTAAAGATTCGAGATTCGTCTGTGGACAGGACACCCTCTAGGAAAAACGTATACAACGCAATCATATCGGTAAACTATCTAAAGAGGACCGAACccgtatattaaattaaaacaactaaaaagtTACAGACACCTTTAAAACATTAGTCAGTGGCATGCACAGTGTCGGACATCTCTTCCCCATCGTTTGGCAGGACCTTTTAGCCTCTTAACACCACAGACTGCGGAAGGACATTTAAAAGTGATGACATGAAAGATGcttgtatatttaacatttccTCTCCCCCCACACTCGTTTTTAGTAGTCACATTTACAATGAACTATAATCATAAAAGTGTTTCCTATAAAAGTAATAAGAACCGGGCcgtattcataaaacattaaccaGCATCATCGTCTTATTGAGTAACTGTAACGTATAACATGACAGAATAACAGAAGTATAAACTGACATCCCTGGAGGTAGTTGTAACCTTGTAACAGttggggtttgtttttgtttagttttttgtttaaacaaactgGAGTACAATTGGCCTGGTGCGTTACAAATATGACCcatgaagttaaaaaaattaaaacaaaactataacaaaaaaaggtctgtgttttttgtgtgtgtctaaaGCGGACATCGAACCCGTGCTGTCATGGCCTCTTGCTGTCCAGAAGGGCCTTCCAATCACACGACCAGGACTGGAGTCTCCGGAGGCACGAGCTGGGCGGCAGGTGTTTGTTGTGGCAGGCGGTGAAAAGGATATGCTCCCAGGAGGGATTGGGTTCAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144386 lncRNA downstream 242 5749783 ~ 5750043 (-) True G115278
TU144385 lncRNA downstream 1926 5747458 ~ 5748359 (-) True G115277
TU144336 lncRNA downstream 142216 5607833 ~ 5608069 (-) True G115243
TU144306 lncRNA downstream 400655 5345762 ~ 5349630 (-) True G115219
TU144448 lncRNA upstream 292109 6046030 ~ 6046618 (-) True G115332
TU144532 lncRNA upstream 463607 6217528 ~ 6219216 (-) True G115395
TU144711 lncRNA upstream 1247881 7001802 ~ 7002005 (-) True G115534
TU144760 lncRNA upstream 1980176 7734097 ~ 7734384 (-) True G115577
TU144762 lncRNA upstream 1988053 7741974 ~ 7742210 (-) True G115579
AMCG00018262 mRNA downstream 4581 5741029 ~ 5745704 (-) True AMCG00018262
AMCG00018258 mRNA downstream 137810 5608590 ~ 5612475 (-) True AMCG00018258
AMCG00018251 mRNA downstream 383532 5360737 ~ 5366753 (-) False AMCG00018251
AMCG00018250 mRNA downstream 395362 5349638 ~ 5354923 (-) True AMCG00018250
AMCG00018252 mRNA downstream 407301 5332241 ~ 5342984 (-) True AMCG00018252
AMCG00018264 mRNA upstream 29155 5783076 ~ 5784900 (-) True AMCG00018264
AMCG00018265 mRNA upstream 40596 5794517 ~ 5808843 (-) True AMCG00018265
AMCG00018263 mRNA upstream 127625 5881546 ~ 5886000 (-) True AMCG00018263
AMCG00018274 mRNA upstream 314382 6068303 ~ 6124832 (-) True AMCG00018274
AMCG00018289 mRNA upstream 374792 6128713 ~ 6155791 (-) True AMCG00018289
TU144300 other downstream 383531 5356846 ~ 5366754 (-) True AMCG00018251
TU144251 other downstream 445856 5300107 ~ 5304429 (-) True G115183
TU144253 other downstream 445897 5300107 ~ 5304388 (-) False G115183
TU144242 other downstream 462412 5286386 ~ 5287873 (-) True G115174
TU144068 other downstream 1098673 4646577 ~ 4651612 (-) False AMCG00018220
TU144435 other upstream 196500 5950421 ~ 5951055 (-) True G115320
TU144568 other upstream 864554 6618475 ~ 6623613 (-) False AMCG00018291
TU144582 other upstream 884421 6638342 ~ 6643272 (-) False AMCG00018291
TU144767 other upstream 1989297 7743218 ~ 7773892 (-) True G115581
TU145207 other upstream 3485891 9239812 ~ 9258202 (-) True AMCG00018364

Expression Profile